Revision - 5eda18f - Mergeback of rel_6_8 (#5146)

Revision 5eda18f5008154909e101a5ba98b2c6e97115b23 authored by Tadgh on 30 July 2023, 22:28:26 UTC, committed by GitHub on 30 July 2023, 22:28:26 UTC

Mergeback of rel_6_8 (#5146)

* version bump

* Bump to core release 6.0.22 (#5028)

* Bump to core release 6.0.16

* Bump to core version 6.0.20

* Fix errors thrown as a result of VersionSpecificWorkerContextWrapper

* Bump to core 6.0.22

* Resolve 5126 hfj res ver prov might cause migration error on db that automatically indexes the primary key (#5127)

* dropped old index FK_RESVERPROV_RES_PID on RES_PID column before adding IDX_RESVERPROV_RES_PID

* added changelog

* changed to valid version number

* changed to valid version number, need to be ordered by version number...

* 5123 - Use DEFAULT partition for server-based requests if none specified (#5124)

5123 - Use DEFAULT partition for server-based requests if none specified

* consent remove all suppresses next link in bundle (#5119)

* added FIXME with source of issue

* added FIXME with root cause

* added FIXME with root cause

* Providing solution to the issue and removing fixmes.

* Providing changelog

* auto-formatting.

* Adding new test.

* Adding a new test for standard paging

* let's try this and see if it works...?

* fix tests

* cleanup to trigger a new run

* fixing tests

---------

Co-authored-by: Ken Stevens <ken@smilecdr.com>
Co-authored-by: peartree <etienne.poirier@smilecdr.com>

* 5117 MDM Score for No Match Fields Should Not Be Included in Total Score  (#5118)

* fix, test, changelog

* fix, test, changelog

---------

Co-authored-by: justindar <justin.dar@smilecdr.com>

* Rename file to force IT mode

---------

Co-authored-by: dotasek <david.otasek@smilecdr.com>
Co-authored-by: TynerGjs <132295567+TynerGjs@users.noreply.github.com>
Co-authored-by: Steve Corbett <137920358+steve-corbett-smilecdr@users.noreply.github.com>
Co-authored-by: Ken Stevens <khstevens@gmail.com>
Co-authored-by: Ken Stevens <ken@smilecdr.com>
Co-authored-by: peartree <etienne.poirier@smilecdr.com>
Co-authored-by: jdar8 <69840459+jdar8@users.noreply.github.com>
Co-authored-by: justindar <justin.dar@smilecdr.com>

1 parent 2b91f0a

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sync_ri3.fish

#!/usr/bin/fish

# Note: Element needs to implement IBaseElement

# Copy Resource Models
for i in (grep -lir ResourceDef ~/workspace/fhir/tags/stu3/build/implementations/java/org.hl7.fhir.dstu3/src/org/hl7/fhir/dstu3/model/*.java); cp $i hapi-fhir-structures-dstu3/src/main/java/org/hl7/fhir/dstu3/model/; end

# Copy Datatype Models
for i in (grep -lir DatatypeDef ~/workspace/fhir/tags/stu3/build/implementations/java/org.hl7.fhir.dstu3/src/org/hl7/fhir/dstu3/model/*.java); cp $i hapi-fhir-structures-dstu3/src/main/java/org/hl7/fhir/dstu3/model/; end

# Copy CodeSystems
rm hapi-fhir-structures-dstu3/src/main/java/org/hl7/fhir/dstu3/model/codesystems/*
cp ~/workspace/fhir/tags/stu3/build/temp/java/org.hl7.fhir.dstu3/src/org/hl7/fhir/dstu3/model/* hapi-fhir-structures-dstu3/src/main/java/org/hl7/fhir/dstu3/model/
cp ~/workspace/fhir/tags/stu3/build/temp/java/org.hl7.fhir.dstu3/src/org/hl7/fhir/dstu3/model/codesystems/* hapi-fhir-structures-dstu3/src/main/java/org/hl7/fhir/dstu3/model/codesystems/


cp ~/workspace/fhir/tags/stu3/build/implementations/java/org.hl7.fhir.dstu3/src/org/hl7/fhir/dstu3/utils/FHIRPathEngine.java hapi-fhir-structures-dstu3/src/main/java/org/hl7/fhir/dstu3/utils/
cp ~/workspace/fhir/tags/stu3/build/implementations/java/org.hl7.fhir.utilities/src/org/hl7/fhir/utilities/xhtml/HierarchicalTableGenerator.java    hapi-fhir-structures-dstu3/src/main/java/org/hl7/fhir/utilities/xhtml/
cp ~/workspace/fhir/tags/stu3/build/implementations/java/org.hl7.fhir.dstu3/src/org/hl7/fhir/dstu3/terminologies/ValueSetExpanderSimple.java   hapi-fhir-structures-dstu3/src/main/java/org/hl7/fhir/dstu3/terminologies/
cp ~/workspace/fhir/tags/stu3/build/implementations/java/org.hl7.fhir.dstu3/src/org/hl7/fhir/dstu3/terminologies/ValueSetExpander.java   hapi-fhir-structures-dstu3/src/main/java/org/hl7/fhir/dstu3/terminologies/
cp ~/workspace/fhir/tags/stu3/build/implementations/java/org.hl7.fhir.dstu3/src/org/hl7/fhir/dstu3/terminologies/ValueSetExpansionCache.java   hapi-fhir-structures-dstu3/src/main/java/org/hl7/fhir/dstu3/terminologies/
cp ~/workspace/fhir/tags/stu3/build/implementations/java/org.hl7.fhir.dstu3/src/org/hl7/fhir/dstu3/terminologies/ValueSetCheckerSimple.java   hapi-fhir-structures-dstu3/src/main/java/org/hl7/fhir/dstu3/terminologies/
cp /home/james/workspace/fhir/tags/stu3/build/implementations/java/org.hl7.fhir.dstu3/src/org/hl7/fhir/dstu3/model/ExpressionNode.java hapi-fhir-structures-dstu3/src/main/java/org/hl7/fhir/dstu3/model/
cp ~/workspace/fhir/tags/stu3/build/implementations/java/org.hl7.fhir.dstu3/src/org/hl7/fhir/dstu3/model/Base.java hapi-fhir-structures-dstu3/src/main/java/org/hl7/fhir/dstu3/model/
cp ~/workspace/fhir/tags/stu3/build/implementations/java/org.hl7.fhir.dstu3/src/org/hl7/fhir/dstu3/elementmodel/Element.java  hapi-fhir-structures-dstu3/src/main/java/org/hl7/fhir/dstu3/elementmodel/
cp ~/workspace/fhir/tags/stu3/build/implementations/java/org.hl7.fhir.dstu3/src/org/hl7/fhir/dstu3/elementmodel/Property.java   hapi-fhir-structures-dstu3/src/main/java/org/hl7/fhir/dstu3/elementmodel/
cp ~/workspace/fhir/tags/stu3/build/implementations/java/org.hl7.fhir.dstu3/src/org/hl7/fhir/dstu3/conformance/ProfileUtilities.java   hapi-fhir-structures-dstu3/src/main/java/org/hl7/fhir/dstu3/conformance/
cp ~/workspace/fhir/tags/stu3/build/implementations/java/org.hl7.fhir.dstu3/src/org/hl7/fhir/dstu3/elementmodel/ObjectConverter.java  hapi-fhir-structures-dstu3/src/main/java/org/hl7/fhir/dstu3/elementmodel/

cp ~/workspace/fhir/tags/stu3/build/implementations/java/org.hl7.fhir.dstu3/src/org/hl7/fhir/dstu3/elementmodel/XmlParser.java  hapi-fhir-structures-dstu3/src/main/java/org/hl7/fhir/dstu3/elementmodel/
cp ~/workspace/fhir/tags/stu3/build/implementations/java/org.hl7.fhir.dstu3/src/org/hl7/fhir/dstu3/elementmodel/JsonParser.java  hapi-fhir-structures-dstu3/src/main/java/org/hl7/fhir/dstu3/elementmodel/

cp /home/james/workspace/fhir/tags/stu3/build/implementations/java/org.hl7.fhir.dstu3/src/org/hl7/fhir/dstu3/utils/StructureMapUtilities.java hapi-fhir-structures-dstu3/src/main/java/org/hl7/fhir/dstu3/utils/
cp /home/james/workspace/fhir/tags/stu3/build/implementations/java/org.hl7.fhir.dstu3/src/org/hl7/fhir/dstu3/utils/formats/JsonTrackingParser.java  hapi-fhir-structures-dstu3/src/main/java/org/hl7/fhir/dstu3/utils/formats/

cp /home/james/workspace/fhir/tags/stu3/build/implementations/java/org.hl7.fhir.dstu3/src/org/hl7/fhir/dstu3/utils/formats/XmlLocationAnnotator.java   hapi-fhir-structures-dstu3/src/main/java/org/hl7/fhir/dstu3/utils/formats/
cp /home/james/workspace/fhir/tags/stu3/build/implementations/java/org.hl7.fhir.dstu3/src/org/hl7/fhir/dstu3/utils/formats/XmlLocationData.java   hapi-fhir-structures-dstu3/src/main/java/org/hl7/fhir/dstu3/utils/formats/

cp /home/james/workspace/fhir/tags/stu3/build/implementations/java/org.hl7.fhir.dstu3/src/org/hl7/fhir/dstu3/terminologies/CodeSystemUtilities.java   hapi-fhir-structures-dstu3/src/main/java/org/hl7/fhir/dstu3/terminologies/


# Validation
rm hapi-fhir-validator/src/main/java/org/hl7/fhir/dstu3/validation/*
cp ~/workspace/fhir/tags/stu3/build/implementations/java/org.hl7.fhir.validation/src/org/hl7/fhir/dstu3/validator/*.java hapi-fhir-structures-dstu3/src/main/java/org/hl7/fhir/dstu3/validation/
cp ~/workspace/fhir/tags/stu3/build/implementations/java/org.hl7.fhir.utilities/src/org/hl7/fhir/utilities/validation/ValidationMessage.java hapi-fhir-validator/src/main/java/org/hl7/fhir/utilities/validation/
 cp ~/workspace/fhir/tags/stu3/build/implementations/java/org.hl7.fhir.dstu3/src/org/hl7/fhir/dstu3/utils/IResourceValidator.java hapi-fhir-validator/src/main/java/org/hl7/fhir/dstu3/utils/
cp ~/workspace/fhir/tags/stu3/build/implementations/java/org.hl7.fhir.dstu3/src/org/hl7/fhir/dstu3/utils/ValidationProfileSet.java  hapi-fhir-validator/src/main/java/org/hl7/fhir/dstu3/utils/



 
# Copy Spreadsheets
rm hapi-tinder-plugin/src/main/resources/res/dstu3/*.xml; cp ~/workspace/fhir/tags/stu3/build/source/*/*-spreadsheet.xml hapi-tinder-plugin/src/main/resources/res/dstu3/; rm hapi-tinder-plugin/src/main/resources/res/dstu3/*-*-*.xml

# Copy Validation Resources
cp ~/workspace/fhir/tags/stu3/build/publish/*.sch hapi-fhir-validation-resources-dstu3/src/main/resources/org/hl7/fhir/instance/model/dstu3/schema/

cp ~/workspace/fhir/tags/stu3/build/publish/fhir-single.xsd  hapi-fhir-validation-resources-dstu3/src/main/resources/org/hl7/fhir/instance/model/dstu3/schema/
cp ~/workspace/fhir/tags/stu3/build/publish/fhir-xhtml.xsd   hapi-fhir-validation-resources-dstu3/src/main/resources/org/hl7/fhir/instance/model/dstu3/schema/
cp ~/workspace/fhir/tags/stu3/build/publish/xml.xsd   hapi-fhir-validation-resources-dstu3/src/main/resources/org/hl7/fhir/instance/model/dstu3/schema/

cp ~/workspace/fhir/tags/stu3/build/publish/profiles-*.xml hapi-fhir-validation-resources-dstu3/src/main/resources/org/hl7/fhir/instance/model/dstu3/profile/
cp ~/workspace/fhir/tags/stu3/build/publish/v2-tables.xml  hapi-fhir-validation-resources-dstu3/src/main/resources/org/hl7/fhir/instance/model/dstu3/valueset/
cp ~/workspace/fhir/tags/stu3/build/publish/v3-codesystems.xml   hapi-fhir-validation-resources-dstu3/src/main/resources/org/hl7/fhir/instance/model/dstu3/valueset/
cp ~/workspace/fhir/tags/stu3/build/publish/valuesets.xml    hapi-fhir-validation-resources-dstu3/src/main/resources/org/hl7/fhir/instance/model/dstu3/valueset/

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