Revision 5ff9602467a0ecc792af177f16c04da02119b062 authored by HF on 01 May 2020, 16:19:27 UTC, committed by HF on 01 May 2020, 16:19:27 UTC
1 parent 98bb622
normalization3d-test.jl
using FileIO
include("normalization3d.jl")
include("tiffxml.jl")
data_dir = "/datahub/rawdata/tandeng/mRNA_imaging/mRNA_confocal_hamamatsu-60X-TIRF/20200316_result"
#cell_name = filter(x->occursin(r"^s",x), readdir(data_dir) )
cell_name = filter(x->occursin(r"^s[0-9][0-9]?-c[0-9][0-9]?.tiff-clear.ome.tiff$",x), readdir(data_dir) )
parameters = []
for name in cell_name
print("processing $name")
@time cell = load(File(format"TIFF", "$data_dir/$name"))
@time imgs_norms, para = normalize(cell)
push!(parameters, para)
end
save("normalization3d-test.jld", "parameters", parameters)
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