Skip to main content

Browse the archive

Revision 6482c23af4f30acb875b21273fb50c506a22f625 authored by Thomas Mooney on 08 October 2015, 21:55:48 UTC, committed by Thomas Mooney on 08 October 2015, 21:55:48 UTC 
Disable index creation in `gmt mutect`.
 
When run in the pipeline it uses a hardcoded ROD that should already be
indexed.  (See also
<http://gatkforums.broadinstitute.org/discussion/1252/unifiedgenotyper-gets-hung-waiting-for-file-lock>
for more information.)
1 parent 122c6ea
Raw File
README 
# Genome

Genome analysis software from The Genome Institute at Washington University
School of Medicine, funded by the National Human Genome Research Institute.

## Testing

Running tests currently depends on many TGI resources so testing cannot be
performed outside TGI at this time.  Within TGI you can run tests by doing,

    genome-test-env test-tracker prove --lsf --git

This chains the `genome-test-env` and `test-tracker` commands together.  See
`test-tracker prove --help` for its usage.  For example, you may need to pass a
value to the `--git` option if your branch is not setup to track
`origin/master`.
back to top