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Revision Author Date Message Commit Date
6601a29 GPCRs 13 September 2018, 16:42:14 UTC
c18d447 updated with new guidetopharmacology.org dataset (much smaller list than before) 13 September 2018, 16:22:57 UTC
10eb9a9 updated numbers after mapping new gene symbols 13 September 2018, 16:16:52 UTC
7b18b7e updated HGNC gene symbols 13 September 2018, 16:15:06 UTC
8c937b4 grab the level 3 entries out of latest clingen 13 September 2018, 16:11:49 UTC
252df25 clingen HI updated 13 September 2018, 16:10:33 UTC
91515c1 ran Konrad's hom lof tolerant code 13 September 2018, 14:18:55 UTC
1ad75ae updated with HGNC symbols 2018-09-13 13 September 2018, 14:14:49 UTC
12f34a8 385 13 September 2018, 13:52:21 UTC
6b0489f updated HGNC gene symbols 13 September 2018, 13:51:57 UTC
f3ef09b updated FDA-approved drug targets with new data pull from drugbank 13 September 2018, 13:38:14 UTC
07f6c1a resolved even more conflicts. always pull before pushing 06 July 2018, 18:30:21 UTC
a43f80e resolved conflicts 06 July 2018, 18:29:03 UTC
9b176c2 GPI-anchored proteins 06 July 2018, 18:28:14 UTC
34b59cb Merge pull request #9 from shusson/ACMG_v2_0 add ACMG v2.0 gene list 01 November 2017, 16:32:39 UTC
607fa70 add ACMG v2.0 http://www.nature.com/gim/journal/v19/n2/abs/gim2016190a.html 01 November 2017, 01:54:29 UTC
2714e11 Merge pull request #7 from zx8754/patch-3 Added BROCA list 28 March 2017, 12:58:14 UTC
45ff22d Merge pull request #6 from zx8754/patch-2 Create BROCA.R 28 March 2017, 12:58:04 UTC
17f6563 Merge pull request #5 from zx8754/patch-1 Create BROCA_Cancer_Risk_Panel.tsv 28 March 2017, 12:57:53 UTC
8952349 Added BROCA list 28 March 2017, 11:51:15 UTC
665b7c2 Create BROCA.R 28 March 2017, 11:44:11 UTC
5d08234 Create BROCA_Cancer_Risk_Panel.tsv 28 March 2017, 11:42:36 UTC
0d0c637 New key for accessing OMIM API hard-coded to parse_omim script. Also, re-downloaded OMIM data 23 May 2016, 14:22:01 UTC
95f8cf8 Regenerated OMIM files with more transparent gene name translations 03 March 2016, 03:19:15 UTC
a166cbe Added multiple versions of OMIM table: one with gene names taken straight from OMIM, another with an attempt to simplify gene names to reflect accepted HGNC convention. Also, cleaned up OMIM parsing code. 15 January 2016, 22:54:19 UTC
bbf6350 updated OMIM table 18 December 2015, 15:32:50 UTC
5e05d66 FMRP interactors list 21 October 2015, 00:23:16 UTC
2aad805 added code link 24 September 2015, 18:36:19 UTC
fa28ee3 added X-linked clinvar 24 September 2015, 18:35:45 UTC
6b847d7 X-linked ClinVar symbols meeting certain criteria 24 September 2015, 18:32:23 UTC
96e3cfa extract X-linked ClinVar symbols meeting certain criteria 24 September 2015, 18:32:11 UTC
1649e96 parsing birnie's table to yield flat lists and a gene-phenotype table 25 August 2015, 01:14:50 UTC
fe796bf Dancik 2010 22 July 2015, 17:46:16 UTC
51ad257 natural product targets from Dancik 2010 22 July 2015, 17:46:05 UTC
bc72a23 added a space 22 July 2015, 17:06:25 UTC
fcf0150 GPCRs 22 July 2015, 17:05:59 UTC
48e5f43 GPCRs from guidetopharmacology.org 22 July 2015, 17:03:21 UTC
c33c87b get GPCR list from guidetopharmacology.org 22 July 2015, 17:03:10 UTC
7aea21b Fixed simplification of gene symbol to approved symbol according to HGNC. 17 June 2015, 04:34:22 UTC
1d8a604 quick fix. 17 June 2015, 03:51:49 UTC
7cfaf37 Created thesaurus file with 2 columns: approved symbol, synonymous symbols. Modified omim_api.py to use this thesaurus file. Added the new OMIM table resulting from these changes. 17 June 2015, 03:43:10 UTC
2fae74b Added script omim_api.py for querying OMIM. Also, added output of that script: omim_table.tsv. 15 June 2015, 17:54:58 UTC
e16d33f Scraped kinase list from UniProt 01 June 2015, 23:02:13 UTC
4cf2b5a fixed link for ClinGen Haploinsufficient 23 May 2015, 21:02:56 UTC
a212ca7 readme about clinvar list 12 May 2015, 15:55:05 UTC
a90052b genes with at least one variant asserted as pathogenic or likely pathogenic in ClinVar as of 2015-05-12 12 May 2015, 15:52:40 UTC
49725fd different way of checking if in dictionary per @konradjk's suggestion 04 May 2015, 19:43:31 UTC
69a8fa7 added citation for olfactory receptors 04 May 2015, 19:41:20 UTC
d8a9c1a olfactory receptor list from Mainland et al 2015 04 May 2015, 19:38:52 UTC
f6a9f22 grab olfactory receptor list from Mainland et al 2015 04 May 2015, 19:38:39 UTC
17ecb80 using get() instead of [] for dict to avoid KeyError 04 May 2015, 19:37:00 UTC
01a678e command line script to update a list of gene symbols 04 May 2015, 19:34:43 UTC
beae602 fixed citations 01 April 2015, 19:10:46 UTC
18a88bb shortened more URLs 01 April 2015, 19:10:23 UTC
1d0cbd0 shortened URLs and standardized citation formats 01 April 2015, 19:09:58 UTC
092ab3a fixed more conflicts 01 April 2015, 19:06:54 UTC
2715206 Merge pull request #4 from zx8754/patch-3 DNA Repair Genes by Kang J - DRG_KangJ.tsv 01 April 2015, 19:06:02 UTC
1cbae51 fixed conflicts 01 April 2015, 19:05:51 UTC
535af11 merged README changes from Tokhir Dadaev 01 April 2015, 19:05:09 UTC
a92d6a8 Merge pull request #2 from zx8754/patch-2 Output file from DRG_WoodRD.R script 01 April 2015, 19:03:18 UTC
ca051bb Merge pull request #1 from zx8754/patch-1 DNA Repair Genes - WoodRD list - DRG_WoodRD.R script 01 April 2015, 19:03:09 UTC
e3b3b1e Included description of ClinGen 01 April 2015, 03:34:40 UTC
2072a97 removing old file 01 April 2015, 03:33:41 UTC
dce75e1 ClinGen dosage sensitive genes (evidence level 3) 01 April 2015, 03:23:49 UTC
ede4c6e Added ClinGen dosage sensitivity genes (level 3 evidence) 01 April 2015, 03:15:21 UTC
cda9293 Description for KangJ DRG list 31 March 2015, 17:19:26 UTC
a53a1c6 Create DRG_KangJ.tsv 31 March 2015, 17:06:54 UTC
9bdbc3f DRG_WoodRD Gene list description added 31 March 2015, 16:38:25 UTC
2cac3d1 Output file from DRG_WoodRD.R script 31 March 2015, 16:16:02 UTC
b15a28d Update DRG_WoodRD.R 31 March 2015, 16:09:53 UTC
9297f18 Create DRG_WoodRD.R Extract DNA Repair Genes from WoodRD website - http://sciencepark.mdanderson.org/labs/wood/dna_repair_genes.html 31 March 2015, 16:07:52 UTC
8601df2 universe 26 February 2015, 16:52:04 UTC
2bcca3c changed confusing variable name 23 February 2015, 23:16:15 UTC
d97e20c MGI essential gene list 23 February 2015, 23:08:21 UTC
1b4e06d MGI essential gene list 23 February 2015, 23:03:55 UTC
dc4f519 MGI essential genes list 23 February 2015, 23:03:45 UTC
c17f2b1 typo 23 February 2015, 22:59:28 UTC
dac7e3c GWAS catalog genes, now tab delimited 23 February 2015, 20:15:10 UTC
a06ab7f updated readme on gwas list 23 February 2015, 20:05:14 UTC
cf34568 renamed, removed erroneous lines, removed dups 23 February 2015, 20:04:44 UTC
290a24e clarified date accessed in readme 23 February 2015, 19:59:59 UTC
456cda8 clarified GWAS list in readme 23 February 2015, 19:59:35 UTC
0a03d38 added Essential in Culture and GWAS genes to README 23 February 2015, 19:58:55 UTC
7a54643 removed header line for consistency with other lists 23 February 2015, 19:54:15 UTC
07847b1 karol added GWAS gene list 23 February 2015, 19:53:09 UTC
26d198d Core Essentials from Hart 2014 23 February 2015, 19:53:00 UTC
b183e61 parsing Core Essentials list from Hart 2014 23 February 2015, 19:52:47 UTC
070f6a5 Adding gene set of genes in GWAS catalog with P < 5e-8 23 February 2015, 19:41:05 UTC
734158b added shoutout to Russ & Lampel 18 February 2015, 23:03:51 UTC
13f2c74 added note about Nelson list 18 February 2015, 23:01:09 UTC
b0a54d0 list from Nelson 2012 18 February 2015, 22:59:55 UTC
65783f3 parse list from Nelson 2012 18 February 2015, 22:59:45 UTC
6b51b5b added note about pull requests 09 February 2015, 19:16:23 UTC
34a5090 added count column 09 February 2015, 19:13:44 UTC
3ab575c finished a draft README 09 February 2015, 19:10:49 UTC
de892bc first draft of readme partway done, checking whether markdown will render properly 09 February 2015, 19:01:36 UTC
0034b28 download HGNC protein-coding genes and extract current symbols 09 February 2015, 19:00:09 UTC
0ab848e union of Berg and Blekhman lists 09 February 2015, 18:46:28 UTC
98b708d just taking union of Berg and Blekhman AD and AR lists for now, can add more later 09 February 2015, 18:46:13 UTC
aed81e6 lists from Berg 2013 09 February 2015, 18:41:32 UTC
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