6601a29 | ericminikel | 13 September 2018, 16:42:14 UTC | GPCRs | 13 September 2018, 16:42:14 UTC |
c18d447 | ericminikel | 13 September 2018, 16:22:57 UTC | updated with new guidetopharmacology.org dataset (much smaller list than before) | 13 September 2018, 16:22:57 UTC |
10eb9a9 | ericminikel | 13 September 2018, 16:16:52 UTC | updated numbers after mapping new gene symbols | 13 September 2018, 16:16:52 UTC |
7b18b7e | ericminikel | 13 September 2018, 16:15:06 UTC | updated HGNC gene symbols | 13 September 2018, 16:15:06 UTC |
8c937b4 | ericminikel | 13 September 2018, 16:11:49 UTC | grab the level 3 entries out of latest clingen | 13 September 2018, 16:11:49 UTC |
252df25 | ericminikel | 13 September 2018, 16:10:33 UTC | clingen HI updated | 13 September 2018, 16:10:33 UTC |
91515c1 | ericminikel | 13 September 2018, 14:18:55 UTC | ran Konrad's hom lof tolerant code | 13 September 2018, 14:18:55 UTC |
1ad75ae | ericminikel | 13 September 2018, 14:14:49 UTC | updated with HGNC symbols 2018-09-13 | 13 September 2018, 14:14:49 UTC |
12f34a8 | ericminikel | 13 September 2018, 13:52:21 UTC | 385 | 13 September 2018, 13:52:21 UTC |
6b0489f | ericminikel | 13 September 2018, 13:51:57 UTC | updated HGNC gene symbols | 13 September 2018, 13:51:57 UTC |
f3ef09b | ericminikel | 13 September 2018, 13:38:14 UTC | updated FDA-approved drug targets with new data pull from drugbank | 13 September 2018, 13:38:14 UTC |
07f6c1a | Eric Minikel | 06 July 2018, 18:30:21 UTC | resolved even more conflicts. always pull before pushing | 06 July 2018, 18:30:21 UTC |
a43f80e | Eric Minikel | 06 July 2018, 18:29:03 UTC | resolved conflicts | 06 July 2018, 18:29:03 UTC |
9b176c2 | Eric Minikel | 06 July 2018, 18:28:14 UTC | GPI-anchored proteins | 06 July 2018, 18:28:14 UTC |
34b59cb | Eric Minikel | 01 November 2017, 16:32:39 UTC | Merge pull request #9 from shusson/ACMG_v2_0 add ACMG v2.0 gene list | 01 November 2017, 16:32:39 UTC |
607fa70 | Shane Husson | 01 November 2017, 01:23:40 UTC | add ACMG v2.0 http://www.nature.com/gim/journal/v19/n2/abs/gim2016190a.html | 01 November 2017, 01:54:29 UTC |
2714e11 | Eric Minikel | 28 March 2017, 12:58:14 UTC | Merge pull request #7 from zx8754/patch-3 Added BROCA list | 28 March 2017, 12:58:14 UTC |
45ff22d | Eric Minikel | 28 March 2017, 12:58:04 UTC | Merge pull request #6 from zx8754/patch-2 Create BROCA.R | 28 March 2017, 12:58:04 UTC |
17f6563 | Eric Minikel | 28 March 2017, 12:57:53 UTC | Merge pull request #5 from zx8754/patch-1 Create BROCA_Cancer_Risk_Panel.tsv | 28 March 2017, 12:57:53 UTC |
8952349 | Tokhir Dadaev | 28 March 2017, 11:51:15 UTC | Added BROCA list | 28 March 2017, 11:51:15 UTC |
665b7c2 | Tokhir Dadaev | 28 March 2017, 11:44:11 UTC | Create BROCA.R | 28 March 2017, 11:44:11 UTC |
5d08234 | Tokhir Dadaev | 28 March 2017, 11:42:36 UTC | Create BROCA_Cancer_Risk_Panel.tsv | 28 March 2017, 11:42:36 UTC |
0d0c637 | Daniel Birnbaum | 23 May 2016, 14:22:01 UTC | New key for accessing OMIM API hard-coded to parse_omim script. Also, re-downloaded OMIM data | 23 May 2016, 14:22:01 UTC |
95f8cf8 | Daniel Birnbaum | 03 March 2016, 03:19:15 UTC | Regenerated OMIM files with more transparent gene name translations | 03 March 2016, 03:19:15 UTC |
a166cbe | Daniel Birnbaum | 15 January 2016, 22:54:19 UTC | Added multiple versions of OMIM table: one with gene names taken straight from OMIM, another with an attempt to simplify gene names to reflect accepted HGNC convention. Also, cleaned up OMIM parsing code. | 15 January 2016, 22:54:19 UTC |
bbf6350 | Daniel Birnbaum | 18 December 2015, 15:32:50 UTC | updated OMIM table | 18 December 2015, 15:32:50 UTC |
5e05d66 | ksamocha | 21 October 2015, 00:23:16 UTC | FMRP interactors list | 21 October 2015, 00:23:16 UTC |
2aad805 | Eric Minikel | 24 September 2015, 18:36:19 UTC | added code link | 24 September 2015, 18:36:19 UTC |
fa28ee3 | Eric Minikel | 24 September 2015, 18:35:45 UTC | added X-linked clinvar | 24 September 2015, 18:35:45 UTC |
6b847d7 | Eric Minikel | 24 September 2015, 18:32:23 UTC | X-linked ClinVar symbols meeting certain criteria | 24 September 2015, 18:32:23 UTC |
96e3cfa | Eric Minikel | 24 September 2015, 18:32:11 UTC | extract X-linked ClinVar symbols meeting certain criteria | 24 September 2015, 18:32:11 UTC |
1649e96 | Eric Minikel | 25 August 2015, 01:14:50 UTC | parsing birnie's table to yield flat lists and a gene-phenotype table | 25 August 2015, 01:14:50 UTC |
fe796bf | Eric Minikel | 22 July 2015, 17:46:16 UTC | Dancik 2010 | 22 July 2015, 17:46:16 UTC |
51ad257 | Eric Minikel | 22 July 2015, 17:46:05 UTC | natural product targets from Dancik 2010 | 22 July 2015, 17:46:05 UTC |
bc72a23 | Eric Minikel | 22 July 2015, 17:06:25 UTC | added a space | 22 July 2015, 17:06:25 UTC |
fcf0150 | Eric Minikel | 22 July 2015, 17:05:59 UTC | GPCRs | 22 July 2015, 17:05:59 UTC |
48e5f43 | Eric Minikel | 22 July 2015, 17:03:21 UTC | GPCRs from guidetopharmacology.org | 22 July 2015, 17:03:21 UTC |
c33c87b | Eric Minikel | 22 July 2015, 17:03:10 UTC | get GPCR list from guidetopharmacology.org | 22 July 2015, 17:03:10 UTC |
7aea21b | bernie | 17 June 2015, 04:34:22 UTC | Fixed simplification of gene symbol to approved symbol according to HGNC. | 17 June 2015, 04:34:22 UTC |
1d8a604 | bernie | 17 June 2015, 03:51:49 UTC | quick fix. | 17 June 2015, 03:51:49 UTC |
7cfaf37 | bernie | 17 June 2015, 03:43:10 UTC | Created thesaurus file with 2 columns: approved symbol, synonymous symbols. Modified omim_api.py to use this thesaurus file. Added the new OMIM table resulting from these changes. | 17 June 2015, 03:43:10 UTC |
2fae74b | bernie | 15 June 2015, 17:54:58 UTC | Added script omim_api.py for querying OMIM. Also, added output of that script: omim_table.tsv. | 15 June 2015, 17:54:58 UTC |
e16d33f | Eric Minikel | 01 June 2015, 23:02:13 UTC | Scraped kinase list from UniProt | 01 June 2015, 23:02:13 UTC |
4cf2b5a | Eric Minikel | 23 May 2015, 21:02:56 UTC | fixed link for ClinGen Haploinsufficient | 23 May 2015, 21:02:56 UTC |
a212ca7 | Eric Minikel | 12 May 2015, 15:55:05 UTC | readme about clinvar list | 12 May 2015, 15:55:05 UTC |
a90052b | Eric Minikel | 12 May 2015, 15:52:40 UTC | genes with at least one variant asserted as pathogenic or likely pathogenic in ClinVar as of 2015-05-12 | 12 May 2015, 15:52:40 UTC |
49725fd | Eric Minikel | 04 May 2015, 19:43:31 UTC | different way of checking if in dictionary per @konradjk's suggestion | 04 May 2015, 19:43:31 UTC |
69a8fa7 | Eric Minikel | 04 May 2015, 19:41:20 UTC | added citation for olfactory receptors | 04 May 2015, 19:41:20 UTC |
d8a9c1a | Eric Minikel | 04 May 2015, 19:38:52 UTC | olfactory receptor list from Mainland et al 2015 | 04 May 2015, 19:38:52 UTC |
f6a9f22 | Eric Minikel | 04 May 2015, 19:38:39 UTC | grab olfactory receptor list from Mainland et al 2015 | 04 May 2015, 19:38:39 UTC |
17ecb80 | Eric Minikel | 04 May 2015, 19:37:00 UTC | using get() instead of [] for dict to avoid KeyError | 04 May 2015, 19:37:00 UTC |
01a678e | Eric Minikel | 04 May 2015, 19:34:43 UTC | command line script to update a list of gene symbols | 04 May 2015, 19:34:43 UTC |
beae602 | Eric Minikel | 01 April 2015, 19:10:46 UTC | fixed citations | 01 April 2015, 19:10:46 UTC |
18a88bb | Eric Minikel | 01 April 2015, 19:10:23 UTC | shortened more URLs | 01 April 2015, 19:10:23 UTC |
1d0cbd0 | Eric Minikel | 01 April 2015, 19:09:58 UTC | shortened URLs and standardized citation formats | 01 April 2015, 19:09:58 UTC |
092ab3a | Eric Minikel | 01 April 2015, 19:06:54 UTC | fixed more conflicts | 01 April 2015, 19:06:54 UTC |
2715206 | Eric Minikel | 01 April 2015, 19:06:02 UTC | Merge pull request #4 from zx8754/patch-3 DNA Repair Genes by Kang J - DRG_KangJ.tsv | 01 April 2015, 19:06:02 UTC |
1cbae51 | Eric Minikel | 01 April 2015, 19:05:51 UTC | fixed conflicts | 01 April 2015, 19:05:51 UTC |
535af11 | Eric Minikel | 01 April 2015, 19:05:09 UTC | merged README changes from Tokhir Dadaev | 01 April 2015, 19:05:09 UTC |
a92d6a8 | Eric Minikel | 01 April 2015, 19:03:18 UTC | Merge pull request #2 from zx8754/patch-2 Output file from DRG_WoodRD.R script | 01 April 2015, 19:03:18 UTC |
ca051bb | Eric Minikel | 01 April 2015, 19:03:09 UTC | Merge pull request #1 from zx8754/patch-1 DNA Repair Genes - WoodRD list - DRG_WoodRD.R script | 01 April 2015, 19:03:09 UTC |
e3b3b1e | ksamocha | 01 April 2015, 03:34:40 UTC | Included description of ClinGen | 01 April 2015, 03:34:40 UTC |
2072a97 | ksamocha | 01 April 2015, 03:33:41 UTC | removing old file | 01 April 2015, 03:33:41 UTC |
dce75e1 | ksamocha | 01 April 2015, 03:23:49 UTC | ClinGen dosage sensitive genes (evidence level 3) | 01 April 2015, 03:23:49 UTC |
ede4c6e | ksamocha | 01 April 2015, 03:15:21 UTC | Added ClinGen dosage sensitivity genes (level 3 evidence) | 01 April 2015, 03:15:21 UTC |
cda9293 | Tokhir Dadaev | 31 March 2015, 17:19:26 UTC | Description for KangJ DRG list | 31 March 2015, 17:19:26 UTC |
a53a1c6 | Tokhir Dadaev | 31 March 2015, 17:06:54 UTC | Create DRG_KangJ.tsv | 31 March 2015, 17:06:54 UTC |
9bdbc3f | Tokhir Dadaev | 31 March 2015, 16:38:25 UTC | DRG_WoodRD Gene list description added | 31 March 2015, 16:38:25 UTC |
2cac3d1 | Tokhir Dadaev | 31 March 2015, 16:16:02 UTC | Output file from DRG_WoodRD.R script | 31 March 2015, 16:16:02 UTC |
b15a28d | Tokhir Dadaev | 31 March 2015, 16:09:53 UTC | Update DRG_WoodRD.R | 31 March 2015, 16:09:53 UTC |
9297f18 | Tokhir Dadaev | 31 March 2015, 16:07:52 UTC | Create DRG_WoodRD.R Extract DNA Repair Genes from WoodRD website - http://sciencepark.mdanderson.org/labs/wood/dna_repair_genes.html | 31 March 2015, 16:07:52 UTC |
8601df2 | Eric Minikel | 26 February 2015, 16:52:04 UTC | universe | 26 February 2015, 16:52:04 UTC |
2bcca3c | Eric Minikel | 23 February 2015, 23:16:15 UTC | changed confusing variable name | 23 February 2015, 23:16:15 UTC |
d97e20c | Eric Minikel | 23 February 2015, 23:08:21 UTC | MGI essential gene list | 23 February 2015, 23:08:21 UTC |
1b4e06d | Eric Minikel | 23 February 2015, 23:03:55 UTC | MGI essential gene list | 23 February 2015, 23:03:55 UTC |
dc4f519 | Eric Minikel | 23 February 2015, 23:03:45 UTC | MGI essential genes list | 23 February 2015, 23:03:45 UTC |
c17f2b1 | Eric Minikel | 23 February 2015, 22:59:28 UTC | typo | 23 February 2015, 22:59:28 UTC |
dac7e3c | Karol | 23 February 2015, 20:15:10 UTC | GWAS catalog genes, now tab delimited | 23 February 2015, 20:15:10 UTC |
a06ab7f | Eric Minikel | 23 February 2015, 20:05:14 UTC | updated readme on gwas list | 23 February 2015, 20:05:14 UTC |
cf34568 | Eric Minikel | 23 February 2015, 20:04:44 UTC | renamed, removed erroneous lines, removed dups | 23 February 2015, 20:04:44 UTC |
290a24e | Eric Minikel | 23 February 2015, 19:59:59 UTC | clarified date accessed in readme | 23 February 2015, 19:59:59 UTC |
456cda8 | Eric Minikel | 23 February 2015, 19:59:35 UTC | clarified GWAS list in readme | 23 February 2015, 19:59:35 UTC |
0a03d38 | Eric Minikel | 23 February 2015, 19:58:55 UTC | added Essential in Culture and GWAS genes to README | 23 February 2015, 19:58:55 UTC |
7a54643 | Eric Minikel | 23 February 2015, 19:54:15 UTC | removed header line for consistency with other lists | 23 February 2015, 19:54:15 UTC |
07847b1 | Eric Minikel | 23 February 2015, 19:53:09 UTC | karol added GWAS gene list | 23 February 2015, 19:53:09 UTC |
26d198d | Eric Minikel | 23 February 2015, 19:53:00 UTC | Core Essentials from Hart 2014 | 23 February 2015, 19:53:00 UTC |
b183e61 | Eric Minikel | 23 February 2015, 19:52:47 UTC | parsing Core Essentials list from Hart 2014 | 23 February 2015, 19:52:47 UTC |
070f6a5 | Karol | 23 February 2015, 19:41:05 UTC | Adding gene set of genes in GWAS catalog with P < 5e-8 | 23 February 2015, 19:41:05 UTC |
734158b | Eric Minikel | 18 February 2015, 23:03:51 UTC | added shoutout to Russ & Lampel | 18 February 2015, 23:03:51 UTC |
13f2c74 | Eric Minikel | 18 February 2015, 23:01:09 UTC | added note about Nelson list | 18 February 2015, 23:01:09 UTC |
b0a54d0 | Eric Minikel | 18 February 2015, 22:59:55 UTC | list from Nelson 2012 | 18 February 2015, 22:59:55 UTC |
65783f3 | Eric Minikel | 18 February 2015, 22:59:45 UTC | parse list from Nelson 2012 | 18 February 2015, 22:59:45 UTC |
6b51b5b | Eric Minikel | 09 February 2015, 19:16:23 UTC | added note about pull requests | 09 February 2015, 19:16:23 UTC |
34a5090 | Eric Minikel | 09 February 2015, 19:13:44 UTC | added count column | 09 February 2015, 19:13:44 UTC |
3ab575c | Eric Minikel | 09 February 2015, 19:10:49 UTC | finished a draft README | 09 February 2015, 19:10:49 UTC |
de892bc | Eric Minikel | 09 February 2015, 19:01:36 UTC | first draft of readme partway done, checking whether markdown will render properly | 09 February 2015, 19:01:36 UTC |
0034b28 | Eric Minikel | 09 February 2015, 19:00:09 UTC | download HGNC protein-coding genes and extract current symbols | 09 February 2015, 19:00:09 UTC |
0ab848e | Eric Minikel | 09 February 2015, 18:46:28 UTC | union of Berg and Blekhman lists | 09 February 2015, 18:46:28 UTC |
98b708d | Eric Minikel | 09 February 2015, 18:46:13 UTC | just taking union of Berg and Blekhman AD and AR lists for now, can add more later | 09 February 2015, 18:46:13 UTC |
aed81e6 | Eric Minikel | 09 February 2015, 18:41:32 UTC | lists from Berg 2013 | 09 February 2015, 18:41:32 UTC |