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66357a4 clevermx 18 January 2022, 11:09:39 UTC Modify counts processing in order to support additional collections (not only ARCHs4). Add meta-files generation for new counts processing. Add support for 8+ versions of ARCHs4. Co-authored-by: Alexey Sergushichev <alserg@itmo.ru> Merge-request: PHANTASUS-MR-21 Merged-by: Maksim Kleverov <klevermx@gmail.com> 18 January 2022, 11:09:39 UTC
d230978 Alexey Sergushichev 30 November 2021, 13:04:04 UTC Fix PHANTASUS-T-48 30 November 2021, 13:04:04 UTC
5bcaa19 Alexey Sergushichev 13 November 2021, 18:46:20 UTC bump version in js 13 November 2021, 18:46:20 UTC
a83f5d4 Alexey Sergushichev 13 November 2021, 18:43:28 UTC version bump 13 November 2021, 18:43:28 UTC
f60223b Alexey Sergushichev 04 November 2021, 12:25:10 UTC check correctness of GSE ID before download 04 November 2021, 12:25:10 UTC
e88df20 Alexey Sergushichev 04 November 2021, 12:24:44 UTC workaround for seandavi/GEOquery #120 04 November 2021, 12:24:44 UTC
8c06bbe Alexey Sergushichev 04 November 2021, 10:17:26 UTC fix load of GPL soft files 04 November 2021, 10:17:26 UTC
669840a Alexey Sergushichev 02 November 2021, 18:02:25 UTC space.kts fixes 02 November 2021, 18:02:25 UTC
11b7294 Alexey Sergushichev 02 November 2021, 18:01:18 UTC update js 02 November 2021, 18:01:18 UTC
aa2dee3 Alexey Sergushichev 02 November 2021, 17:30:47 UTC fix some test warnings 02 November 2021, 17:30:47 UTC
9ca07de Alexey Sergushichev 02 November 2021, 17:30:24 UTC testing correctness of versions in static files 02 November 2021, 17:30:24 UTC
bc79a9b Alexey Sergushichev 01 November 2021, 18:05:43 UTC version bump 01 November 2021, 18:05:43 UTC
75da639 Alexey Sergushichev 01 November 2021, 18:04:03 UTC Merge branch 'space_jobs' 01 November 2021, 18:04:03 UTC
9ce860a Alexey Sergushichev 01 November 2021, 17:47:58 UTC Merge branch 'master' of git.bioconductor.org:packages/phantasus 01 November 2021, 17:47:58 UTC
dfd4b41 Alexey Sergushichev 01 November 2021, 16:42:57 UTC update js 01 November 2021, 16:42:57 UTC
b02f634 Alexey Sergushichev 01 November 2021, 16:42:37 UTC fix commit id generation for update_js.sh 01 November 2021, 16:42:37 UTC
9ba9b97 Nitesh Turaga 26 October 2021, 16:42:56 UTC bump x.y.z version to odd y following creation of RELEASE_3_14 branch 26 October 2021, 16:42:56 UTC
26a4f40 Nitesh Turaga 26 October 2021, 16:42:56 UTC bump x.y.z version to even y prior to creation of RELEASE_3_14 branch 26 October 2021, 16:42:56 UTC
294a0fd Alexey Sergushichev 26 October 2021, 14:09:13 UTC docker entrypoint catches interrupts 26 October 2021, 14:09:13 UTC
7b6fe45 clevermx 25 October 2021, 17:25:47 UTC update preloaded session doc 25 October 2021, 17:25:47 UTC
86dd632 clevermx 25 October 2021, 17:10:17 UTC add whole example into dontrun 25 October 2021, 17:10:17 UTC
19e41bf clevermx 25 October 2021, 16:44:38 UTC Merge branch 'space_jobs' of ssh://git.jetbrains.space/ctlab/phantasus/phantasus into space_jobs 25 October 2021, 16:44:38 UTC
8aa72dd clevermx 25 October 2021, 16:39:15 UTC Delete symlinks to logs 25 October 2021, 16:39:15 UTC
9093256 Maksim Kleverov 21 October 2021, 12:33:39 UTC change apt to apt-get 21 October 2021, 12:33:39 UTC
d8a33b0 Maksim Kleverov 21 October 2021, 11:50:42 UTC just print coverage, without sending 21 October 2021, 11:50:42 UTC
56686fa Maksim Kleverov 20 October 2021, 13:07:58 UTC -y to firefox 20 October 2021, 13:07:58 UTC
c583de0 Maksim Kleverov 20 October 2021, 12:51:13 UTC add firefox instalation -_- 20 October 2021, 12:51:13 UTC
8cd8f84 Maksim Kleverov 19 October 2021, 18:49:48 UTC add -y to npm instalation 19 October 2021, 18:49:48 UTC
b0509a0 Maksim Kleverov 19 October 2021, 18:32:17 UTC run tests of js and R in parallel 19 October 2021, 18:32:17 UTC
2acb8fa Maksim Kleverov 19 October 2021, 18:22:49 UTC install bioccheck 19 October 2021, 18:22:49 UTC
0689398 clevermx 19 October 2021, 18:16:53 UTC add firefox as js testing browser and other small fixes for tests 19 October 2021, 18:16:53 UTC
8bab52f clevermx 19 October 2021, 09:18:05 UTC Merge branch 'space_jobs' of ssh://git.jetbrains.space/ctlab/phantasus/phantasus into space_jobs 19 October 2021, 09:18:05 UTC
1f6ce22 clevermx 19 October 2021, 09:14:04 UTC fixes pass tests: fix loadGEO test with corresponding to new layout add otherOptions of convertByAnnotationDB in documentation 19 October 2021, 09:14:04 UTC
426d053 Maksim Kleverov 18 October 2021, 16:25:07 UTC add docker build 18 October 2021, 16:25:07 UTC
38879f1 Maksim Kleverov 18 October 2021, 15:15:53 UTC remove js test from R check 18 October 2021, 15:15:53 UTC
a4307ee Maksim Kleverov 18 October 2021, 15:03:47 UTC add JS instalation 18 October 2021, 15:03:47 UTC
693adfa Maksim Kleverov 18 October 2021, 09:35:58 UTC test conteiner env 18 October 2021, 09:35:58 UTC
7402ec5 Maksim Kleverov 18 October 2021, 08:54:57 UTC fix path to shared file 18 October 2021, 08:54:57 UTC
a52dacc Maksim Kleverov 18 October 2021, 07:25:02 UTC split job to steps (check shared files) 18 October 2021, 07:25:02 UTC
fd649a3 Maksim Kleverov 16 October 2021, 13:41:27 UTC add tag to docker for now 16 October 2021, 13:41:27 UTC
cf6b452 Maksim Kleverov 16 October 2021, 13:34:03 UTC probably fix startOn 16 October 2021, 13:34:03 UTC
27703d8 Maksim Kleverov 16 October 2021, 13:22:53 UTC maybe fix quotes 16 October 2021, 13:22:53 UTC
f6beb9f Maksim Kleverov 16 October 2021, 13:15:10 UTC fix quotes and return statOn condition 16 October 2021, 13:15:10 UTC
8dca547 Maksim Kleverov 16 October 2021, 13:11:38 UTC remove start on push in preimage 16 October 2021, 13:11:38 UTC
1f39808 Maksim Kleverov 16 October 2021, 12:08:09 UTC try to fix startOn for testing in preimage 16 October 2021, 12:08:09 UTC
089f42c Maksim Kleverov 16 October 2021, 11:59:02 UTC add job that checks in preimage 16 October 2021, 11:59:02 UTC
bf29923 clevermx 16 October 2021, 10:58:42 UTC add argument for external preimage 16 October 2021, 10:58:42 UTC
a76b58c Alexey Sergushichev 09 October 2021, 11:51:22 UTC Add JBR badge 09 October 2021, 11:51:22 UTC
c6bb0e9 Alexey Sergushichev 02 July 2021, 13:19:49 UTC Update js 02 July 2021, 13:19:49 UTC
0264dd6 Alexey Sergushichev 02 July 2021, 13:17:41 UTC Annotations are transmitted with type information Co-authored-by: Maksim Kleverov <klevermx@gmail.com> 02 July 2021, 13:17:41 UTC
8e5506f Alexey Sergushichev 02 July 2021, 13:12:42 UTC Merge branch 'master' of git.bioconductor.org:packages/phantasus 02 July 2021, 13:12:42 UTC
c7903d1 Nitesh Turaga 19 May 2021, 16:34:17 UTC bump x.y.z version to odd y following creation of RELEASE_3_13 branch 19 May 2021, 16:34:17 UTC
e2115e2 Nitesh Turaga 19 May 2021, 16:34:17 UTC bump x.y.z version to even y prior to creation of RELEASE_3_13 branch 19 May 2021, 16:34:17 UTC
9eeea5e Alexey Sergushichev 08 April 2021, 15:43:54 UTC Update .travis.yml to fix osx builds (#159) 08 April 2021, 15:43:54 UTC
046f374 Alexey Sergushichev 08 April 2021, 13:01:42 UTC update logos 08 April 2021, 13:01:42 UTC
9b78487 Alexey Sergushichev 12 March 2021, 14:29:14 UTC Update .travis.yml don't test against bioc-devel 12 March 2021, 14:29:14 UTC
9240d9b Alexey Sergushichev 12 March 2021, 09:50:45 UTC version bump 12 March 2021, 09:50:45 UTC
d807293 Alexey Sergushichev 12 March 2021, 09:47:37 UTC Update JS: workaround for PHANTASUS-T-27 and fix for PHANTASUS-T-28 12 March 2021, 09:47:37 UTC
f6c9356 Alexey Sergushichev 12 March 2021, 09:45:24 UTC Add option for omitting ID versions Co-authored-by: Maksim Kleverov <klevermx@gmail.com> 12 March 2021, 09:45:24 UTC
ca6d6f8 Alexey Sergushichev 12 March 2021, 07:53:17 UTC Merge branch 'master' of github.com:ctlab/phantasus 12 March 2021, 07:53:17 UTC
4d952be Alexey Sergushichev 11 March 2021, 16:07:36 UTC update_js.sh script takes phantasus.js dir 11 March 2021, 16:07:36 UTC
3060d2b Nitesh Turaga 27 October 2020, 15:33:27 UTC bump x.y.z version to odd y following creation of RELEASE_3_12 branch 27 October 2020, 15:33:27 UTC
efcdf05 Nitesh Turaga 27 October 2020, 15:33:27 UTC bump x.y.z version to even y prior to creation of RELEASE_3_12 branch 27 October 2020, 15:33:27 UTC
84076a6 Alexey Sergushichev 21 October 2020, 13:33:52 UTC Example fix 21 October 2020, 13:33:52 UTC
e7501bc Alexey Sergushichev 21 October 2020, 12:43:55 UTC curl import 21 October 2020, 12:43:55 UTC
0eb6552 Alexey Sergushichev 21 October 2020, 12:41:09 UTC missed file 21 October 2020, 12:41:09 UTC
686c52a Alexey Sergushichev 21 October 2020, 12:06:32 UTC version bump 21 October 2020, 12:06:32 UTC
5a1f686 Alexey Sergushichev 30 September 2020, 12:26:01 UTC Update JS 30 September 2020, 12:26:01 UTC
8d87c9a Alexey Sergushichev 30 September 2020, 12:07:34 UTC Backend for preloaded sessions 30 September 2020, 12:07:34 UTC
0ff160a Alexey Sergushichev 21 July 2020, 08:50:36 UTC fix locale problems in Dockerfile 21 July 2020, 08:50:36 UTC
196f3db Alexey Sergushichev 20 July 2020, 21:37:31 UTC version bump 20 July 2020, 21:37:31 UTC
1736b06 Alexey Sergushichev 20 July 2020, 21:35:05 UTC changed port in docker compose 20 July 2020, 21:35:05 UTC
8788845 Alexey Sergushichev 20 July 2020, 11:08:25 UTC fix documentation for write.gct 20 July 2020, 11:08:25 UTC
a6e0738 Alexey Sergushichev 20 July 2020, 10:24:22 UTC Nginx workser to 2, refactor configs a bit 20 July 2020, 10:24:22 UTC
5a0c839 Alexey Sergushichev 09 July 2020, 11:36:12 UTC remove entrypoint.sh from dockerignore 09 July 2020, 11:36:12 UTC
1f0bbbb Alexey Sergushichev 09 July 2020, 09:33:43 UTC missed copying docker-entrypoint.sh 09 July 2020, 09:33:43 UTC
d57fe7b Alexey Sergushichev 08 July 2020, 21:12:34 UTC missed file 08 July 2020, 21:12:34 UTC
78d905c Alexey Sergushichev 08 July 2020, 16:47:36 UTC fix order 08 July 2020, 16:47:36 UTC
a76fa60 Alexey Sergushichev 08 July 2020, 16:03:02 UTC Merge branch 'master' into develop 08 July 2020, 16:03:02 UTC
5766032 Alexey Sergushichev 08 July 2020, 15:27:21 UTC Dockerfile with rApache 08 July 2020, 15:27:21 UTC
24584c8 Alexey Sergushichev 30 May 2020, 12:33:15 UTC version bump 30 May 2020, 12:33:15 UTC
42f1e47 Alexey Sergushichev 25 May 2020, 08:51:51 UTC version bump 25 May 2020, 08:51:51 UTC
75e9b76 Alexey Sergushichev 25 May 2020, 08:50:37 UTC Merge branch 'master' of github.com:ctlab/phantasus 25 May 2020, 08:50:37 UTC
2e41a62 Alexey Sergushichev 23 May 2020, 10:05:33 UTC checking number of selected rows on row profile start 23 May 2020, 10:05:33 UTC
8023a5f Alexey Sergushichev 13 May 2020, 17:56:06 UTC Travis fix 1 (#154) * Update .travis.yml 13 May 2020, 17:56:06 UTC
5ae6e3d Alexey Sergushichev 13 May 2020, 12:31:17 UTC Update appveyor.yml 13 May 2020, 12:31:17 UTC
65ff2d0 Alexey Sergushichev 13 May 2020, 12:15:39 UTC Update appveyor.yml 13 May 2020, 12:15:39 UTC
75e2789 Alexey Sergushichev 13 May 2020, 12:11:46 UTC Update README.md 13 May 2020, 12:11:46 UTC
59194a6 Alexey Sergushichev 13 May 2020, 12:06:35 UTC remove osx bioc-devl from travis matrix 13 May 2020, 12:06:35 UTC
62b87fd Alexey Sergushichev 13 May 2020, 12:00:52 UTC Update README.md 13 May 2020, 12:00:52 UTC
c40cd66 Alexey Sergushichev 13 May 2020, 11:04:52 UTC Even more proper image 13 May 2020, 11:04:52 UTC
ed60429 Alexey Sergushichev 13 May 2020, 11:03:57 UTC Proper image link 13 May 2020, 11:03:57 UTC
bcd9d80 Alexey Sergushichev 13 May 2020, 11:00:43 UTC Merge branch 'master' of git.bioconductor.org:packages/phantasus 13 May 2020, 11:00:43 UTC
5dfce1d Alexey Sergushichev 13 May 2020, 11:00:21 UTC update README 13 May 2020, 11:00:21 UTC
6fe2980 Nitesh Turaga 27 April 2020, 19:14:57 UTC bump x.y.z version to odd y following creation of RELEASE_3_11 branch 27 April 2020, 19:14:57 UTC
fe9c382 Nitesh Turaga 27 April 2020, 19:14:57 UTC bump x.y.z version to even y prior to creation of RELEASE_3_11 branch 27 April 2020, 19:14:57 UTC
59fd34f Alexey Sergushichev 18 March 2020, 18:53:55 UTC eps -> absEps for compatibility with current bioc-release 18 March 2020, 18:53:55 UTC
77806dd Alexey Sergushichev 18 March 2020, 17:41:32 UTC version bump 18 March 2020, 17:41:32 UTC
e1e99bd Alexey Sergushichev 18 March 2020, 17:41:05 UTC warning fixes 18 March 2020, 17:41:05 UTC
d2a4ccf Alexey Sergushichev 18 March 2020, 17:40:49 UTC fix error in loadGSE due to stringAsFactors=FALSE 18 March 2020, 17:40:49 UTC
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