Revision 66aef922265a2ab84bef590eaee3cd0b124ea155 authored by Scott Smith on 20 November 2012, 16:29:09 UTC, committed by Scott Smith on 20 November 2012, 16:29:09 UTC
1 parent d88201f
test-env.sh
set -o nounset
SNAPSHOT_LIB="/gsc/scripts/opt/genome/current/user/lib/perl"
SNAPSHOT_BIN="/gsc/scripts/opt/genome/current/user/bin"
# remove /gsc/scripts/opt/genome/current/user/*
PERL5LIB="$(echo $PERL5LIB | tr : "\n" | grep -v "$SNAPSHOT_LIB" | tr '\n' : | sed 's/:$//')"
PATH="$(echo $PATH | tr : "\n" | grep -v "$SNAPSHOT_BIN" | tr '\n' : | sed 's/:$//')"
PERL5LIB=$WORKSPACE/ur/lib:$PERL5LIB
PATH=$WORKSPACE/ur/bin:$PATH
PERL5LIB=$WORKSPACE/workflow/lib:$PERL5LIB
PATH=$WORKSPACE/workflow/bin:$PATH
PERL5LIB=$WORKSPACE/lib/perl:$PERL5LIB
PATH=$WORKSPACE/bin:$PATH
export PERL5LIB
export PATH
set +o nounset
for MODULE in UR Workflow Genome; do
if wtf $MODULE | grep -q "$SNAPSHOT_LIB"; then echo "$MODULE found in $SNAPSHOT_LIB! Aborting!" && exit 1; fi
done
for BIN in ur workflow genome; do
if which $BIN | grep -q "$SNAPSHOT_BIN"; then echo "$BIN found in $SNAPSHOT_BIN! Aborting!" && exit 1; fi
done
Computing file changes ...