Skip to main content

Browse the archive

Revision 66b8b8d7ec52a6b7735b4a889ad4aebbec01eaba authored by Caley Finn on 02 January 2018, 06:28:41 UTC, committed by Caley Finn on 02 January 2018, 06:28:41 UTC 
Unit tests with left-permeable two-species model.
1 parent 52b9187
Raw File
README.md 
# latticesim
General simulation code for ASEP like models on 1D lattices.

## Very brief instructions
Download the jars for [gson](https://github.com/google/gson) and [Apache Common Maths](http://commons.apache.org/proper/commons-math/) and update env.sh to point to them.

Now compiles with [Maven](https://maven.apache.org/)
```
mvn compile
```

To run the ASEP simulation from the samples folder
```
./run.sh < samples/asep.json > asep.out.json
```

Python script to plot resulting density profiles (uses matplotlib)
```
python plotdensity.py asep.out.json
```
back to top