https://github.com/GPflow/GPflow
Revision 67cfd5d2d25a3a90e1f873fbac0b05c025d04a1d authored by Alexander G. de G. Matthews on 19 August 2016, 11:52:31 UTC, committed by GitHub on 19 August 2016, 11:52:31 UTC
adding optional Lmin to hmc procedure
2 parent s 62472ea + 689fe4b
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Tip revision: 67cfd5d2d25a3a90e1f873fbac0b05c025d04a1d authored by Alexander G. de G. Matthews on 19 August 2016, 11:52:31 UTC
Merge pull request #168 from GPflow/hmc_options
Tip revision: 67cfd5d
test_autoflow.py
import GPflow
import tensorflow as tf
import numpy as np
import unittest


class DumbModel(GPflow.model.Model):
    def __init__(self):
        GPflow.model.Model.__init__(self)
        self.a = GPflow.param.Param(3.)

    def build_likelihood(self):
        return -tf.square(self.a)


class NoArgsModel(DumbModel):
    @GPflow.model.AutoFlow()
    def function(self):
        return self.a


class TestNoArgs(unittest.TestCase):
    def setUp(self):
        tf.reset_default_graph()
        self.m = NoArgsModel()
        self.m._compile()

    def test_return(self):
        self.assertTrue(np.allclose(self.m.function(), 3.))

    def test_kill(self):
        # make sure autoflow dicts are removed when _needs_recompile is set.
        keys = [k for k in self.m.__dict__.keys() if k[-11:] == '_AF_storage']
        self.assertTrue(len(keys) == 0, msg="no AF storage should be present to start.")

        self.m.function()

        keys = [k for k in self.m.__dict__.keys() if k[-11:] == '_AF_storage']
        self.assertTrue(len(keys) == 1, msg="AF storage should be present after function call.")

        self.m._needs_recompile = True

        keys = [k for k in self.m.__dict__.keys() if k[-11:] == '_AF_storage']
        self.assertTrue(len(keys) == 0, msg="no AF storage should be present after recompile switch set.")


class AddModel(DumbModel):
    @GPflow.model.AutoFlow((tf.float64,), (tf.float64,))
    def add(self, x, y):
        return tf.add(x, y)


class TestShareArgs(unittest.TestCase):
    """
    This is designed to replicate bug #85, where having two models caused
    autoflow functions to fail because the tf_args were shared over the
    instances.
    """
    def setUp(self):
        tf.reset_default_graph()
        self.m1 = AddModel()
        self.m1._compile()
        self.m2 = AddModel()
        self.m2._compile()
        rng = np.random.RandomState(0)
        self.x = rng.randn(10, 20)
        self.y = rng.randn(10, 20)

    def test_share_args(self):
        self.m1.add(self.x, self.y)
        self.m2.add(self.x, self.y)
        self.m1.add(self.x, self.y)


class TestAdd(unittest.TestCase):
    def setUp(self):
        tf.reset_default_graph()
        self.m = AddModel()
        self.m._compile()
        rng = np.random.RandomState(0)
        self.x = rng.randn(10, 20)
        self.y = rng.randn(10, 20)

    def test_add(self):
        self.assertTrue(np.allclose(self.x + self.y, self.m.add(self.x, self.y)))


class TestGPmodel(unittest.TestCase):
    def setUp(self):
        tf.reset_default_graph()
        rng = np.random.RandomState(0)
        X, Y = rng.randn(2, 10, 1)
        self.m = GPflow.svgp.SVGP(X, Y, kern=GPflow.kernels.Matern32(1),
                                  likelihood=GPflow.likelihoods.StudentT(),
                                  Z=X[::2].copy())
        self.Xtest = np.random.randn(100, 1)
        self.Ytest = np.random.randn(100, 1)

    def test_predict_f(self):
        mu, var = self.m.predict_f(self.Xtest)

    def test_predict_y(self):
        mu, var = self.m.predict_y(self.Xtest)

    def test_predict_density(self):
        self.m.predict_density(self.Xtest, self.Ytest)


class TestResetGraph(unittest.TestCase):
    def setUp(self):
        tf.reset_default_graph()
        k = GPflow.kernels.Matern32(1)
        X, Y = np.random.randn(2, 10, 1)
        self.Xnew = np.random.randn(5, 1)
        self.m = GPflow.gpr.GPR(X, Y, kern=k)

    def test(self):
        mu, var = self.m.predict_f(self.Xnew)
        tf.reset_default_graph()
        mu1, var1 = self.m.predict_f(self.Xnew)


class TestFixAndPredict(unittest.TestCase):
    """
    Bug #54 says that if a model parameter is fixed  between calls to predict
    (an autoflow fn) then the second call fails. This test ensures replicates
    that and ensures that the bugfix remains in furure.
    """

    def setUp(self):
        rng = np.random.RandomState(0)
        X, Y = rng.randn(2, 10, 1)
        self.m = GPflow.svgp.SVGP(X, Y, kern=GPflow.kernels.Matern32(1),
                                  likelihood=GPflow.likelihoods.StudentT(),
                                  Z=X[::2].copy())
        self.Xtest = np.random.randn(100, 1)
        self.Ytest = np.random.randn(100, 1)

    def test(self):
        self.m._compile()
        self.m.kern.variance.fixed = True
        _, _ = self.m.predict_f(self.m.X.value)


class TestSVGP(unittest.TestCase):
    """
    This replicates Alex's code from bug #99
    """
    def test(self):
        rng = np.random.RandomState(1)
        X = rng.randn(10, 1)
        Y = rng.randn(10, 1)
        Z = rng.randn(3, 1)
        model = GPflow.svgp.SVGP(X=X, Y=Y, kern=GPflow.kernels.RBF(1), likelihood=GPflow.likelihoods.Gaussian(), Z=Z)
        model.compute_log_likelihood()


if __name__ == "__main__":
    unittest.main()
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