# Each line is a regular expression against the output of git-secrets
# swagger-java-bitbucket-client/swagger.yaml:.*
# Can match on the content of the string

# swagger-java-bitbucket-client/swagger.yaml:.*
swagger-java-bitbucket-client/swagger.yaml:.*https://api.bitbucket.org/
swagger-java-bitbucket-client/swagger.yaml:.*https://bitbucket.org/
swagger-java-bitbucket-client/swagger.yaml:.*"hash": "
swagger-java-bitbucket-client/swagger.yaml:.*ETag: "
swagger-java-bitbucket-client/swagger.yaml:.*"id": "

# swagger-java-discourse-client/src/main/resources/api.json:.*
# Or use the file name and line-number
swagger-java-discourse-client/src/main/resources/api.json:.*http://127.0.0.1:3000/admin/users/list/active.json?api_key=714552c6148e1617aeab526d0606184b94a80ec048fc09894ff1a72b740c5f19&api_username=discourse1
swagger-java-discourse-client/src/main/resources/api.json:.*api_key=714552c6148e1617aeab526d0606184b94a80ec048fc09894ff1a72b740c5f19

# dockstore-webservice/src/test/resources/gatk-sv-clinical/:.*
dockstore-webservice/src/test/.*.talkowski/sv-vcf-qc@sha256:b7e902c9d65343cd3e74b817e10aa9692111f7edd5b51cf940383a33d22f7af0
dockstore-webservice/src/test/.*.talkowski/sv-vcf-qc@sha256:0a84a24a0924d667f3d2d7142c0db5fe316918e87053e0e60635fd69954fb720

# dockstore-integration-testing/src/test/resources/fixtures/GitHubRefs.json:.*
dockstore-integration-testing/src/test/resources/fixtures/GitHubRefs.json:.*"sha": "
dockstore-integration-testing/src/test/resources/fixtures/GitHubRefs.json:.*https://api.github.com/repos/potato/

# dockstore-integration-testing/src/test/resources/fixtures/GitHubCommit.json:.*
dockstore-integration-testing/src/test/resources/fixtures/GitHubCommit.json:.*https://github.com/potato/xenahub/
dockstore-integration-testing/src/test/resources/fixtures/GitHubCommit.json:.*"sha"
dockstore-integration-testing/src/test/resources/fixtures/GitHubCommit.json:.*https://api.github.com/repos/potato/

# dockstore-webservice/src/test/resources/recursive.wdl:.*
dockstore-webservice/src/test/resources/recursive.wdl:.*.https://raw.githubusercontent.com/dockstore/dockstore/

# dockstore-webservice/src/test/resources/not-really-recursive/not-really-recursive.wdl:.*
# dockstore-webservice/src/test/resources/not-really-recursive/b.wdl:.*
# dockstore-webservice/src/test/resources/not-really-recursive/a.wdl:.*
dockstore-webservice/src/test/resources/not-really-recursive.*.https://raw.githubusercontent.com/dockstore/dockstore/


# dockstore-webservice/src/main/resources/openapi3/openapi.yaml:.*
dockstore-webservice/src/main/resources/openapi3/openapi.yaml:.*checksum=
dockstore-webservice/src/main/resources/openapi3/openapi.yaml:.*checksum:

# dockstore-webservice/src/main/resources/openapi3/openapi.yaml:.*
dockstore-webservice/src/main/resources/swagger.yaml:.*c83478829802b4d36374870843821abe1b625a71/delly_docker
dockstore-webservice/src/main/resources/swagger.yaml:.*pcawg_delly_workflow/ea2a5db69bd20a42976838790bc29294df3af02b

# dockstore-webservice/src/main/java/io/dockstore/webservice/helpers/GitHubSourceCodeRepo.java:.*
dockstore-webservice/src/main/java/io/dockstore/webservice/helpers/GitHubSourceCodeRepo.java:.*https://raw.githubusercontent.com/denis-yuen/

# dockstore-webservice/src/test/resources/importTesting.wdl:.*
dockstore-webservice/src/test/resources/importTesting.wdl:.*https://raw.githubusercontent.com/DockstoreTestUser2/

# dockstore-webservice/src/test/resources/gatk-sv-clinical/GATKSVPipelineClinical.wdl.ref_panel_v1b.NA19240.json:.*
dockstore-webservice/src/test/resources/gatk-sv-clinical/GATKSVPipelineClinical.wdl.ref_panel_v1b.NA19240.json:.*gatksv/gatk:condensecounts-7396ae99aaab07e29c92b509a6515508fbe68158

# dockstore-webservice/src/main/resources/migrations.test.add_service_1.7.0.xml:.*
dockstore-webservice/src/main/resources/migrations.test.add_service_1.7.0.xml:.*<column name="commitid" value="

# dockstore-webservice/src/main/resources/migrations.test.xml:.*
dockstore-webservice/src/main/resources/migrations.test.xml:.*<column name="content" value="

# dockstore-integration-testing/src/test/resources/testWorkflow.json:.*
dockstore-integration-testing/src/test/resources/testWorkflow.json:.*https://github.com/dockstore/dockstore

# image ID that we use
# dockstore-integration-testing/src/test/java/io/dockstore/client/cli/.*.
dockstore-integration-testing/src/test/java/io/dockstore/client/cli/.*.tag.setImageId
dockstore-integration-testing/src/test/java/io/dockstore/client/cli/.*. "--git-reference", "master", "--script"

# dockstore-common/src/test/resources/config:.*
dockstore-common/src/test/resources/config:.*token = 08932ab0c9ae39a880905666902f8659633ae0232e94ba9f3d2094cb928397e7

# dockstore-integration-testing/src/test/resources/md5sum-wrapper-tool.json:.*
dockstore-integration-testing/src/test/resources/md5sum-wrapper-tool.json:.*"expected_md5"

# dockstore-integration-testing/src/test/resources/fixtures/GitHubFileContent.json:.*
dockstore-integration-testing/src/test/resources/fixtures/GitHubFileContent.json:.*"sha": "
dockstore-integration-testing/src/test/resources/fixtures/GitHubFileContent.json:.*https://api.github.com/repos/coverbeck/xenahub

# dockstore-integration-testing/src/test/resources/fixtures/GitHubContents.json:.*
dockstore-integration-testing/src/test/resources/fixtures/GitHubContents.json:.*"sha":
dockstore-integration-testing/src/test/resources/fixtures/GitHubContents.json:.*"sha":
dockstore-integration-testing/src/test/resources/fixtures/GitHubContents.json:.*https://api.github.com/repos/potato/xenahub/

# dockstore-integration-testing/src/test/resources/config:.*
dockstore-integration-testing/src/test/resources/config:.*tokenUser1= 08932ab0c9ae39a880905666902f8659633ae0232e94ba9f3d2094cb928397e7

# dockstore-integration-testing/src/test/java/io/dockstore/common/CommonTestUtilities.java:.*
dockstore-integration-testing/src/test/java/io/dockstore/common/CommonTestUtilities.java:.*DUMMY_TOKEN_1 = "08932ab0c9ae39a880905666902f8659633ae0232e94ba9f3d2094cb928397e7";

# dockstore-integration-testing/src/test/java/io/dockstore/client/cli/WorkflowIT.java:.*
dockstore-integration-testing/src/test/java/io/dockstore/client/cli/WorkflowIT.java:.*nextflow/rnatoy@

# dockstore-integration-testing/src/test/java/io/dockstore/client/cli/OrganizationIT.java:.*
dockstore-integration-testing/src/test/java/io/dockstore/client/cli/OrganizationIT.java:.*aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa"
dockstore-integration-testing/src/test/java/io/dockstore/client/cli/OrganizationIT.java:.*aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaab"

# dockstore-common/src/test/java/io/dockstore/common/yaml/DockstoreYamlTest.java:.*
dockstore-common/src/test/java/io/dockstore/common/yaml/DockstoreYamlTest.java:.*https://raw.githubusercontent.com/denis-yuen/

# dockstore-common/src/test/resources/fixtures/dockerImages10.wdl
dockstore-common/src/test/resources/fixtures.*:60:.*f63e020c4062e0be8d081a50de16562f2ba161166e896655868efdb5527a8640

# dockstore-common/src/test/resources/fixtures/dockerImagesPre10.wdl
dockstore-common/src/test/resources/fixtures/dockerImagesPre10.wdl:56:.*sha256:f63e020c4062e0be8d081a50de16562f2ba161166e896655868efdb5527a8640


# dockstore-webservice/src/main/java/io/swagger/model/ToolDockerfile.java
dockstore-webservice/src/main/java/io/swagger/model/ToolDockerfile.java:.*pcawg_delly_workflow/c83478829802b4d36374870843821abe1b625a71

# swagger-java-sam-client/pom.xml
swagger-java-sam-client/pom.xml:.*broadinstitute/sam/de13d1d

# dockstore-webservice/src/main/java/io/swagger/model/ToolDescriptor.java
dockstore-webservice/src/main/java/io/swagger/model/ToolDescriptor.java:.*pcawg_delly_workflow/ea2a

# dockstore-webservice/src/main/java/io/dockstore/webservice/languages/LanguageHandlerInterface.java
dockstore-webservice/src/main/java/io/dockstore/webservice/languages/LanguageHandlerInterface.java:99:.*broadinstitute/gatk@sha256:98b2f223dce4282c144d249e7e1f47d400ae349404409d01e87df2efeebac439
dockstore-webservice/src/main/java/io/dockstore/webservice/languages/LanguageHandlerInterface.java:102:.*d7bb0589725587f2f67d0340edb81fd1fcba6c5f38166639cf2a252c939aa30c
dockstore-webservice/src/main/java/io/dockstore/webservice/languages/LanguageHandlerInterface.java:530:.*c404618e908391e50953e1ead94fe05dbbddbf532bd5c89b935ef34a9ca130d3


# README.md:.*
README.md:.*https://github.com/dockstore/dockstore/blob/
README.md:.*https://app.codacy.com/app/dockstore/dockstore
README.md:.*db89e89508bd562cd36e9c316ac968ab0a136c0e