Revision 682f285fd83ae609836d7d6257348581b357cec5 authored by Eddie Belter on 19 May 2015, 21:24:55 UTC, committed by Eddie Belter on 19 May 2015, 21:24:55 UTC
1 parent f201ea0
test-env.sh
set -o nounset
SNAPSHOT_LIB="/gsc/scripts/opt/genome/current/user/lib/perl"
SNAPSHOT_BIN="/gsc/scripts/opt/genome/current/user/bin"
# remove /gsc/scripts/opt/genome/current/user/*
PERL5LIB="$(echo $PERL5LIB | tr : "\n" | grep -v "$SNAPSHOT_LIB" | tr '\n' : | sed 's/:$//')"
PATH="$(echo $PATH | tr : "\n" | grep -v "$SNAPSHOT_BIN" | tr '\n' : | sed 's/:$//')"
PERL5LIB=$WORKSPACE/ur/lib:$PERL5LIB
PATH=$WORKSPACE/ur/bin:$PATH
PERL5LIB=$WORKSPACE/workflow/lib:$PERL5LIB
PATH=$WORKSPACE/workflow/bin:$PATH
PERL5LIB=$WORKSPACE/lib/perl:$PERL5LIB
PATH=$WORKSPACE/bin:$PATH
export PERL5LIB
export PATH
set +o nounset
for MODULE in UR Workflow Genome; do
if wtf $MODULE | grep -q "$SNAPSHOT_LIB"; then echo "$MODULE found in $SNAPSHOT_LIB! Aborting!" && exit 1; fi
done
for BIN in ur workflow genome; do
if which $BIN | grep -q "$SNAPSHOT_BIN"; then echo "$BIN found in $SNAPSHOT_BIN! Aborting!" && exit 1; fi
done
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