| 68f93c1 | Wenqing Wang | 11 December 2015, 12:21:47 UTC | [Math] Some updates according to the comments by Christoph | 11 December 2015, 12:57:46 UTC |
| c648a68 | Wenqing Wang | 11 December 2015, 09:52:00 UTC | [Math] Fixed compilation errors under LIS configuration | 11 December 2015, 09:52:00 UTC |
| 270660b | Wenqing Wang | 10 December 2015, 13:12:32 UTC | [TEST] Added a FEM#PETSc solver test with Neumann BC | 10 December 2015, 13:12:32 UTC |
| 07753be | Wenqing Wang | 09 December 2015, 17:05:15 UTC | [BC] Unify the interface of applyKnownSolution | 10 December 2015, 12:04:11 UTC |
| b325f2c | Wenqing Wang | 09 December 2015, 16:31:41 UTC | [BC] Correct index type for Dirichlet BC | 09 December 2015, 16:31:41 UTC |
| 1649dc4 | Lars Bilke | 09 December 2015, 09:27:57 UTC | Merge pull request #905 from TomFischer/SmallBugfix Fixes for AlgorithmProperties and small bug fixes. | 09 December 2015, 09:27:57 UTC |
| f481521 | Lars Bilke | 04 November 2015, 14:28:28 UTC | Fixed threshold filter. Takes first array from parent algorithm as input array to process. Then the user can select another array from dropdown. | 08 December 2015, 13:18:28 UTC |
| cd8f1ba | Lars Bilke | 04 November 2015, 10:49:52 UTC | Fixed pipeline item names for meshes. | 08 December 2015, 13:18:22 UTC |
| ab878f1 | Lars Bilke | 04 November 2015, 10:23:59 UTC | Simplified VtkVisTabWidget. | 08 December 2015, 13:18:16 UTC |
| 88f55cc | Lars Bilke | 04 November 2015, 08:53:24 UTC | Fixed connection due to typo. | 08 December 2015, 13:17:36 UTC |
| 26d575e | Tom Fischer | 08 December 2015, 11:05:03 UTC | Merge pull request #898 from bilke/docset Dash Docset generation | 08 December 2015, 11:05:03 UTC |
| aa2633b | Dmitry Yu. Naumov | 07 December 2015, 13:58:33 UTC | Merge pull request #900 from TomFischer/ToolsCleanupCreateBoundaryConditionsAlongPolylines Cleanup in CreateBoundaryConditionsAlongPolyline. | 07 December 2015, 13:58:33 UTC |
| e841106 | Lars Bilke | 04 December 2015, 08:13:49 UTC | Updated Changelog. | 04 December 2015, 08:13:49 UTC |
| f4d9620 | Dmitry Yu. Naumov | 03 December 2015, 17:49:14 UTC | Merge pull request #902 from bilke/clion-update Updated CLion project files | 03 December 2015, 17:49:14 UTC |
| 75c8a0f | Lars Bilke | 02 December 2015, 15:40:03 UTC | Updated CLion project files. | 02 December 2015, 15:40:03 UTC |
| 5fb0162 | Lars Bilke | 02 December 2015, 15:38:24 UTC | [DE] Disable packaging of currently obsolete user and theory manuals. | 02 December 2015, 15:38:24 UTC |
| 045db5b | Thomas Fischer | 01 December 2015, 11:32:58 UTC | [A/U/ME] Cleanup in CreateBoundaryConditionsAlongPolyline. | 01 December 2015, 11:32:58 UTC |
| 30f90b6 | Lars Bilke | 27 November 2015, 12:06:34 UTC | Use docker images from Jenkins job OGS-6/Docker/Images. | 27 November 2015, 12:06:34 UTC |
| d0d38c2 | Lars Bilke | 27 November 2015, 10:47:57 UTC | Fixed S3 link. | 27 November 2015, 10:47:57 UTC |
| 79b3791 | Lars Bilke | 27 November 2015, 08:43:21 UTC | Added docset feed xml generation. | 27 November 2015, 08:43:21 UTC |
| d290056 | Lars Bilke | 27 November 2015, 07:43:05 UTC | Added check for docsetutil. | 27 November 2015, 07:43:05 UTC |
| 80d5a2a | Lars Bilke | 27 November 2015, 07:27:55 UTC | Missing docsets generation option. | 27 November 2015, 07:27:55 UTC |
| b25db34 | Tom Fischer | 26 November 2015, 12:30:32 UTC | Merge pull request #896 from endJunction/LinSolverConfig Lin solver config | 26 November 2015, 12:30:32 UTC |
| 86b6404 | Dmitri Naumov | 26 November 2015, 11:57:33 UTC | [T] Set linear solver options to previous default. | 26 November 2015, 11:57:33 UTC |
| 886fa9c | Dmitry Yu. Naumov | 25 November 2015, 22:55:10 UTC | Merge pull request #891 from TomFischer/Matrices Integration of boundary conditions of first-type | 25 November 2015, 22:55:10 UTC |
| d198b06 | Dmitry Yu. Naumov | 24 November 2015, 01:09:00 UTC | [T] Add options to TestSerialLinearSolver. | 24 November 2015, 17:19:13 UTC |
| 1503a85 | Dmitry Yu. Naumov | 24 November 2015, 00:32:28 UTC | [T] Update unit-tests for new linear solver config | 24 November 2015, 17:19:13 UTC |
| 59bc998 | Dmitry Yu. Naumov | 24 November 2015, 00:29:54 UTC | [T] Spelling. | 24 November 2015, 17:19:13 UTC |
| 6eb0083 | Dmitri Naumov | 23 November 2015, 17:24:14 UTC | [MaL] Update EigenLisLinearSolver. | 24 November 2015, 14:23:52 UTC |
| 0b93ad3 | Dmitri Naumov | 23 November 2015, 17:23:34 UTC | [MaL] Update options parser for EigenLinearSolver. | 24 November 2015, 14:23:52 UTC |
| d328a01 | Dmitri Naumov | 23 November 2015, 17:22:41 UTC | [MaL] Rewrite lis options with using single string This removes the previous parser for the options and relies on the correct values passed as a string. | 24 November 2015, 14:23:51 UTC |
| f69dbe6 | Dmitri Naumov | 23 November 2015, 16:06:31 UTC | [MaL] Move lis' MatrixType into LisMatrix class. | 24 November 2015, 13:56:51 UTC |
| 8b558bc | Dmitri Naumov | 19 November 2015, 18:36:15 UTC | [MaL] Add petsc options given in project file. | 24 November 2015, 13:56:51 UTC |
| 02d1dc9 | Dmitri Naumov | 23 November 2015, 17:57:19 UTC | [T] Set lis, eigen, petsc solver options in ctests. Replace the unused line <numerics>LIS</numerics> with following linear solver settings: <linear_solver> <lis>-i cg -p jacobi -tol 1e-16 -maxiter 10000</lis> <eigen> <solver_type>CG</solver_type> <precon_type>jacobi</precon_type> <max_iteration_step>10000</max_iteration_step> <error_tolerance>1e-16</error_tolerance> </eigen> <petsc>-gw_ksp_type cg -gw_pc_type bjacobi -gw_ksp_rtol 1e-16 -gw_ksp_max_it 10000</petsc> </linear_solver> | 24 November 2015, 13:56:51 UTC |
| da2db3d | Dmitry Yu. Naumov | 24 November 2015, 13:55:38 UTC | Merge pull request #895 from bilke/lib-options Added CMake options to specify third-party library searching | 24 November 2015, 13:55:38 UTC |
| b9a061a | Lars Bilke | 24 November 2015, 08:18:38 UTC | OGS_USE_MPI is forced to ON when OGS_USE_PETSC=ON. | 24 November 2015, 08:18:38 UTC |
| 2384c34 | Thomas Fischer | 20 November 2015, 05:56:23 UTC | [MaL/LA/Lis] Removed the penalty method for Dirichlet bc integration. | 24 November 2015, 07:43:11 UTC |
| f36eab7 | Thomas Fischer | 13 November 2015, 09:24:17 UTC | [MaL/LA/Sparse] applyKnownSolution() for CRSMatrices. | 24 November 2015, 07:43:11 UTC |
| a71412b | Lars Bilke | 23 November 2015, 08:07:28 UTC | Merge remote-tracking branch 'origin/master' into lib-options | 23 November 2015, 08:07:28 UTC |
| 770be89 | Lars Bilke | 20 November 2015, 13:48:50 UTC | Fix eigen include dir. | 20 November 2015, 13:48:50 UTC |
| 7e7e1ad | Lars Bilke | 20 November 2015, 13:40:21 UTC | Moved definitions before adding subdirectories in CMake. This should also fix local VTK build with OGS_USE_PETSC. | 20 November 2015, 13:40:21 UTC |
| 88c2610 | Lars Bilke | 20 November 2015, 10:03:40 UTC | Fixed local VTK build. | 20 November 2015, 10:03:40 UTC |
| 3f87e8b | Dmitry Yu. Naumov | 19 November 2015, 23:38:20 UTC | Merge pull request #893 from chleh/lis-performance Lis performance | 19 November 2015, 23:38:20 UTC |
| 3ce69a4 | Lars Bilke | 19 November 2015, 13:57:32 UTC | Travis Eigen is outdated. | 19 November 2015, 13:57:32 UTC |
| 2c7e54a | Lars Bilke | 19 November 2015, 13:48:46 UTC | Fix when an older eigen was found. | 19 November 2015, 13:48:46 UTC |
| 059cb4e | Lars Bilke | 19 November 2015, 13:33:27 UTC | Added CMake options to specify third-party library searching. Boost, VTK, Eigen Closes #892. | 19 November 2015, 13:35:07 UTC |
| 43a8adb | Christoph Lehmann | 17 November 2015, 10:15:38 UTC | [T] changed according to code review suggestions | 17 November 2015, 17:35:46 UTC |
| 692f8aa | Christoph Lehmann | 17 November 2015, 07:52:26 UTC | [T] added and moved assertions | 17 November 2015, 17:35:46 UTC |
| cb05494 | Christoph Lehmann | 16 November 2015, 14:41:48 UTC | [T] Test if internal sparse matrix format of eigen is CSR | 17 November 2015, 17:35:46 UTC |
| fafa2c0 | Christoph Lehmann | 16 November 2015, 14:41:09 UTC | [MaL] added assertion | 17 November 2015, 17:35:46 UTC |
| d9028bf | Christoph Lehmann | 16 November 2015, 14:34:28 UTC | [MaL] Updated applyKnownSolution The new implementation does not destroy the matrix condition number as much as the old one. | 17 November 2015, 17:35:46 UTC |
| c875bc6 | Christoph Lehmann | 16 November 2015, 14:22:39 UTC | [PL] Added CMake option to use EigenLis solver | 17 November 2015, 17:35:46 UTC |
| 94ab096 | Christoph Lehmann | 16 November 2015, 14:45:35 UTC | [MaL] Do not store zeros in matrices. Largely speeds up solver performance in my case. E.g. Lis solver before: 6s, after: 4s | 17 November 2015, 17:35:46 UTC |
| 9f3add4 | Tom Fischer | 17 November 2015, 12:56:06 UTC | Merge pull request #869 from wenqing/output_VTK_PETSc Parallel VTU output | 17 November 2015, 12:56:06 UTC |
| 8d1f1a5 | Dmitry Yu. Naumov | 17 November 2015, 12:27:51 UTC | Merge pull request #886 from TomFischer/AddSurfaceOutputToBoostXmlGmlInterface Surface and polyline output for class BoostXmlGmlInterface. | 17 November 2015, 12:27:51 UTC |
| cef5cbb | Wenqing Wang | 16 November 2015, 17:02:54 UTC | [IO] Removed one misleading comment and use BaseLib::dropFileExtension to remove file name extension for partitioned mesh data files. | 17 November 2015, 09:36:36 UTC |
| 56c48c0 | Tom Fischer | 17 November 2015, 05:00:29 UTC | Merge pull request #13 from endJunction/AddSurfaceOutputToBoostXmlGmlInterface [IO] Merge surface if-cond; add polylines empty test. | 17 November 2015, 05:00:29 UTC |
| 07e9772 | Dmitry Yu. Naumov | 16 November 2015, 16:51:52 UTC | Merge pull request #887 from chleh/sparsity-pattern Multi-component sparsity pattern | 16 November 2015, 16:51:52 UTC |
| 2cf36a6 | Christoph Lehmann | 16 November 2015, 16:31:43 UTC | [Asm] Added comments | 16 November 2015, 16:31:43 UTC |
| bb71357 | Dmitri Naumov | 16 November 2015, 14:25:32 UTC | [IO] Merge surface if-cond; add polylines empty test. | 16 November 2015, 14:25:32 UTC |
| 77ebdd9 | Thomas Fischer | 12 November 2015, 06:35:22 UTC | [T/FileIO] XmlGmlInterface: Make the creation of Polylines more readable. | 16 November 2015, 09:36:07 UTC |
| a81b9e3 | Thomas Fischer | 11 November 2015, 10:05:42 UTC | [T/FileIO] Enable test for BoostXmlGmlInterface. | 16 November 2015, 09:36:07 UTC |
| 0ce1f15 | Thomas Fischer | 10 November 2015, 14:09:03 UTC | [T/FileIO] Restructured and extended XmlGml test. | 16 November 2015, 09:36:07 UTC |
| dc8f59c | Thomas Fischer | 10 November 2015, 14:06:50 UTC | [FileIO] BoostXmlGmlInterface: Added polyline output. | 16 November 2015, 09:33:21 UTC |
| f632119 | Thomas Fischer | 09 July 2015, 11:42:47 UTC | [FileIO] BoostXmlGmlInterface: Add surfaces output. | 16 November 2015, 09:33:21 UTC |
| 6d7c9eb | Dmitri Naumov | 11 November 2015, 20:01:54 UTC | [PL] Remove unnecessary resize. | 16 November 2015, 09:10:52 UTC |
| 9fe6655 | Dmitri Naumov | 11 November 2015, 19:55:22 UTC | [PL] Revert to ifdef USE_PETSC for output. This avoids usage of getValues() functions needed otherwise in matrix classes, which are simple copies for serial cases and something not clearly defined for the parallel cases. Substituting clear ifdef USE_PETSC with some size checks is misleading. | 16 November 2015, 09:10:52 UTC |
| ac49178 | Wenqing Wang | 28 October 2015, 09:55:45 UTC | [Test] Disabled unit test of InSituMesh.MappedMeshSourceRoundtrip in MPI | 16 November 2015, 09:10:51 UTC |
| c08a353 | Wenqing Wang | 19 October 2015, 13:52:08 UTC | [Test] Added a 3D parallel computing test of the Poisson type problem The results of this test are also included. | 16 November 2015, 09:10:51 UTC |
| ce050ad | Wenqing Wang | 19 October 2015, 13:48:14 UTC | [IO] Check more mesh file extensions | 16 November 2015, 09:10:51 UTC |
| f00ff77 | Wenqing Wang | 19 October 2015, 09:21:45 UTC | [IO] Added parallel output of results via pvtu | 16 November 2015, 09:10:51 UTC |
| 82bd155 | Wenqing Wang | 16 October 2015, 13:51:22 UTC | [IO] First parallel vtu output | 16 November 2015, 09:10:51 UTC |
| 9352b4e | Christoph Lehmann | 11 November 2015, 17:38:09 UTC | [MaL] LisMatrix adapted to new sparsity pattern | 16 November 2015, 07:06:34 UTC |
| fba7ad5 | Christoph Lehmann | 11 November 2015, 17:20:55 UTC | [PL] GWFlow adapted to new sparsity pattern | 16 November 2015, 07:06:34 UTC |
| 4d690af | Christoph Lehmann | 11 November 2015, 17:19:56 UTC | [MeL] NodeAdjTable exposes node indices | 16 November 2015, 07:06:34 UTC |
| 42f0558 | Christoph Lehmann | 11 November 2015, 17:19:30 UTC | [MaL] EigenMatrix adapted to new sparsity pattern | 16 November 2015, 07:06:34 UTC |
| 10b54e0 | Christoph Lehmann | 11 November 2015, 17:18:41 UTC | [Asm] CompSparsPat now also computes NodeAdjTable | 16 November 2015, 07:06:34 UTC |
| 5614a2c | Christoph Lehmann | 11 November 2015, 16:59:40 UTC | [Asm] forward method from MeshCompMap | 16 November 2015, 07:06:34 UTC |
| 488c175 | Christoph Lehmann | 11 November 2015, 16:58:08 UTC | [Asm] compute sparsity pattern | 16 November 2015, 07:06:34 UTC |
| 0c00222 | Dmitrij Naumov | 14 November 2015, 20:26:24 UTC | Merge pull request #889 from chleh/lis-options Rewrite of LisOption | 14 November 2015, 20:29:14 UTC |
| 7476f18 | Dmitrij Naumov | 14 November 2015, 20:25:28 UTC | [MaL] Use system include for logog. | 14 November 2015, 20:25:28 UTC |
| 52856cb | Christoph Lehmann | 13 November 2015, 13:41:48 UTC | [MaL] updated comment | 14 November 2015, 20:21:32 UTC |
| f5a8c79 | Christoph Lehmann | 13 November 2015, 11:22:05 UTC | [MaL] reintroduced output of number of openmp processes | 14 November 2015, 20:21:32 UTC |
| 14097c4 | Christoph Lehmann | 12 November 2015, 14:22:22 UTC | [PL] GWFlow reads linear solver options from project file. | 14 November 2015, 20:21:32 UTC |
| 5aec8ec | Christoph Lehmann | 12 November 2015, 14:09:29 UTC | [MaL] reintroduced LisOption::MatrixType | 14 November 2015, 20:18:58 UTC |
| 3440c4e | Christoph Lehmann | 12 November 2015, 14:01:50 UTC | [MaL] EigenLisLinearSolver adapted to new LisOption | 14 November 2015, 20:18:58 UTC |
| 0431783 | Christoph Lehmann | 12 November 2015, 14:01:20 UTC | [MaL] LisLinearSolver adapted to new LisOption | 14 November 2015, 20:18:58 UTC |
| c6387c0 | Christoph Lehmann | 12 November 2015, 13:58:14 UTC | [MaL] LisOption cleaned up and now able to handle arbitrary Lis options. | 14 November 2015, 20:18:58 UTC |
| 248e9d2 | Dmitrij Naumov | 14 November 2015, 12:23:35 UTC | Merge branch 'TomFischer-ComputeSurfaceNodeIDsInPolygonalRegion' | 14 November 2015, 12:23:35 UTC |
| 5a23768 | Thomas Fischer | 06 November 2015, 11:47:16 UTC | Refactored readGeometryFromFile() functionality from tool. | 13 November 2015, 21:12:12 UTC |
| 3ceadd7 | Thomas Fischer | 06 November 2015, 11:46:17 UTC | [FileIO] readGeometryFromFile(): can be used in several places. | 13 November 2015, 21:12:12 UTC |
| 0ed6362 | Thomas Fischer | 04 November 2015, 08:29:20 UTC | Initial commit for ComputeSurfaceNodeIDsInPolygonalRegion.cpp. | 13 November 2015, 21:11:31 UTC |
| cdf5d57 | Dmitry Yu. Naumov | 13 November 2015, 20:41:21 UTC | Merge pull request #890 from TomFischer/SmallChanges srqDist2d() and writeGeometryToFile() | 13 November 2015, 20:41:21 UTC |
| 7367625 | Thomas Fischer | 13 November 2015, 08:01:02 UTC | [FileIO] writeGeometryToFile(). | 13 November 2015, 08:01:02 UTC |
| 99a7d34 | Thomas Fischer | 04 November 2015, 13:12:27 UTC | [MaL] Impl. of sqrDist2d. | 13 November 2015, 07:58:57 UTC |
| e8ef45d | Tom Fischer | 12 November 2015, 11:41:51 UTC | Merge pull request #888 from chleh/eigen-known-solution [MaL] faster applyKnownSolution | 12 November 2015, 11:41:51 UTC |
| 183dc71 | Christoph Lehmann | 11 November 2015, 11:54:46 UTC | [MaL] faster apply known solution | 12 November 2015, 10:02:06 UTC |
| 8806fc1 | Lars Bilke | 11 November 2015, 08:55:19 UTC | Merge pull request #885 from bilke/wget-fix Replace wget by curl | 11 November 2015, 08:55:19 UTC |
| cc4f84f | Lars Bilke | 11 November 2015, 08:44:18 UTC | Replaced wget by curl. Old wget on Travis (Ubuntu 12.04) has some bugs checking certificates, see e.g.: https://github.com/haskell/cabal/issues/1796 | 11 November 2015, 08:44:18 UTC |
| a0f2aec | Dmitry Yu. Naumov | 10 November 2015, 14:57:23 UTC | Merge pull request #882 from bilke/ext-proj-vtk External project vtk | 10 November 2015, 14:57:23 UTC |
