Revision 69c7ae25cacb78131165c0fd66b82b2f73b7c62d authored by AlexFletcher on 07 July 2023, 11:26:18 UTC, committed by AlexFletcher on 07 July 2023, 11:26:18 UTC
1 parent 991c03a
ChasteParameters.xml
<?xml version="1.0" encoding="UTF-8"?>
<ChasteParameters xmlns="https://chaste.comlab.ox.ac.uk/nss/parameters/2017_1"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="https://chaste.comlab.ox.ac.uk/nss/parameters/2017_1 heart/src/io/ChasteParameters_2017_1.xsd">
<!--
Note: all unit attributes must be included, but their content cannot be changed.
They exist for documentary purposes only.
See https://chaste.cs.ox.ac.uk/trac/wiki/ChasteUnits for details
on the units used by Chaste.
-->
<Simulation>
<!--
Problem definition
-->
<SpaceDimension>3</SpaceDimension>
<SimulationDuration unit="ms">50.0</SimulationDuration>
<Domain>Mono</Domain>
<IonicModels>
<Default>
<Hardcoded>FaberRudy2000</Hardcoded>
</Default>
</IonicModels>
<!--
Mesh definition
-->
<Mesh unit="cm">
<Slab x="4.0" y="0.1" z="2.0" inter_node_space="0.1"/>
</Mesh>
<!--
Stimuli (as many <Stimulus> definitions as needed)
-->
<Stimuli>
<Stimulus>
<!-- #1 -->
<Strength unit="uA/cm^3">-25500.0</Strength>
<Duration unit="ms">2.0</Duration>
<Delay unit="ms">0</Delay>
<Location unit="cm">
<Cuboid>
<LowerCoordinates x="0" y="0" z="0"/>
<UpperCoordinates x="0.1" y="0.1" z="2.0"/>
</Cuboid>
</Location>
</Stimulus>
</Stimuli>
<!--
Ionic cell model heterogeneities (as many <CellHeterogeneity> definitions as needed)
-->
<CellHeterogeneities>
<CellHeterogeneity>
<!-- #1 -->
<ScaleFactorGks unit="dimensionless">0.462</ScaleFactorGks>
<ScaleFactorIto unit="dimensionless">0.0</ScaleFactorIto>
<ScaleFactorGkr unit="dimensionless">1.0</ScaleFactorGkr>
<Location unit="cm">
<Cuboid>
<LowerCoordinates x="0" y="0" z="0"/>
<UpperCoordinates x="1.5" y="0.1" z="2.0"/>
</Cuboid>
</Location>
</CellHeterogeneity>
<CellHeterogeneity>
<!-- #2 -->
<ScaleFactorGks unit="dimensionless">1.154</ScaleFactorGks>
<ScaleFactorIto unit="dimensionless">0.85</ScaleFactorIto>
<ScaleFactorGkr unit="dimensionless">1.0</ScaleFactorGkr>
<Location unit="cm">
<Cuboid>
<LowerCoordinates x="1.5" y="0" z="0"/>
<UpperCoordinates x="2.5" y="0.1" z="2.0"/>
</Cuboid>
</Location>
</CellHeterogeneity>
<CellHeterogeneity>
<!-- #3 -->
<ScaleFactorGks unit="dimensionless">1.154</ScaleFactorGks>
<ScaleFactorIto unit="dimensionless">1.0</ScaleFactorIto>
<ScaleFactorGkr unit="dimensionless">1.0</ScaleFactorGkr>
<Location unit="cm">
<Cuboid>
<LowerCoordinates x="1.5" y="0" z="0"/>
<UpperCoordinates x="4.0" y="0.1" z="2.0"/>
</Cuboid>
</Location>
</CellHeterogeneity>
</CellHeterogeneities>
<!--
Output
-->
<OutputDirectory>ChasteResults</OutputDirectory>
<OutputFilenamePrefix>SimulationResults</OutputFilenamePrefix>
<OutputVisualizer meshalyzer="yes"/>
</Simulation>
<Physiological>
<!--
Conductivities
-->
<IntracellularConductivities longi="1.75" trans="1.75" normal="1.75" unit="mS/cm"/>
<ExtracellularConductivities longi="7.0" trans="7.0" normal="7.0" unit="mS/cm"/>
<SurfaceAreaToVolumeRatio unit="1/cm"> 1400 </SurfaceAreaToVolumeRatio>
<Capacitance unit="uF/cm^2"> 1.0 </Capacitance>
</Physiological>
<Numerical>
<TimeSteps ode="0.005" pde="0.01" printing="0.1" unit="ms"/>
<KSPTolerances>
<KSPRelative>1e-6</KSPRelative>
</KSPTolerances>
<KSPSolver>gmres</KSPSolver>
<KSPPreconditioner>jacobi</KSPPreconditioner>
</Numerical>
<PostProcessing> </PostProcessing>
</ChasteParameters>
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