https://github.com/davidcsterratt/KappaNEURON
Revision 6a88c934b3f78ff0a213b88a04e6e7e6efa6df3d authored by David C Sterratt on 06 January 2017, 14:37:31 UTC, committed by David C Sterratt on 06 January 2017, 14:37:31 UTC
1 parent 9aa8f57
Tip revision: 6a88c934b3f78ff0a213b88a04e6e7e6efa6df3d authored by David C Sterratt on 06 January 2017, 14:37:31 UTC
Added pulling of aclocal
Added pulling of aclocal
Tip revision: 6a88c93
caPump2.ka
# Simple calcium pump
# Now with variables to specify the volume.
%agent: ca(x)
%agent: P(x)
# Volume in um3
%var: 'vol' 1
# Avagadro's constant
%var: 'NA' 6.02205E23
# Concentration of one agent in the volume in mM
%var: 'agconc' 1E18/('NA' * 'vol')
# Rate constants in /mM-ms or /ms, depending on the number of reactants
%var: 'k1' 0.001
%var: 'k2' 1
# Rules
'ca binding' ca(x), P(x) -> ca(x!1), P(x!1) @ 'k1' * 'agconc'
'ca release' ca(x!1), P(x!1) -> P(x) @ 'k2'
# Initialise
%init: 1000 ca(x)
%init: 10000 P(x)
%obs: 'ca' ca(x)
%obs: 'P-Ca' ca(x!1), P(x!1)
%obs: 'P' P(x)
Computing file changes ...
