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https://github.com/emsanford/combined_responses_paper
08 August 2021, 01:55:47 UTC
Revision 6d8d1e6f9e3e660f8acd4e748b5a80b3bb6c6d7c authored by emsanford on 03 January 2021, 23:20:22 UTC, committed by GitHub on 03 January 2021, 23:20:22 UTC 
Update README.md
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Tip revision: 6d8d1e6f9e3e660f8acd4e748b5a80b3bb6c6d7c authored by emsanford on 03 January 2021, 23:20:22 UTC
Update README.md
Tip revision: 6d8d1e6
File Mode Size
avgNumMotifsPerPeakType.R -rw-r--r-- 7.6 KB
chromVarMotifPCA.R -rw-r--r-- 3.7 KB
controlTPMbyModeOfIntegrationHistograms.R -rw-r--r-- 4.9 KB
createCvalChangesWithDosePlot.R -rw-r--r-- 8.7 KB
crop_IF_images.m -rw-r--r-- 14.8 KB
doSinglePeakGenesHaveOneToOneLFCMapping.R -rw-r--r-- 8.2 KB
fig4analysisScripts_rough.R -rw-r--r-- 4.5 KB
geneIntegrationSummaryPieChartsAndHistograms.R -rw-r--r-- 6.7 KB
makeAdjacentPeakTypeAssocToGeneTypeModeOfIntegrationPlots.R -rw-r--r-- 14.3 KB
makeDeSeqObsVsExpectedScatterPlot.R -rw-r--r-- 28.4 KB
makeGeneBeeswarmPlot.R -rw-r--r-- 6.7 KB
makeMotifAnalysisPlots.R -rw-r--r-- 16.1 KB
makeNullDistributionCorDvalue.R -rw-r--r-- 19.1 KB
makeSupplementalMotifAnalysisPlots.R -rw-r--r-- 9.6 KB
make_DiffPeakAndDiffGeneVennDiagrams.R -rw-r--r-- 6.5 KB
make_addModelVsObsDataScatterATACpeaks.R -rw-r--r-- 1.3 KB
make_nDeGenesBySignalPlot.R -rw-r--r-- 1.7 KB
make_nDiffPeaksBySignalPlot.R -rw-r--r-- 1.7 KB
npeakUpVsDownRegGenesSummary.R -rw-r--r-- 5.6 KB
obsVsExpectedDualMotifRateByPeakType.R -rw-r--r-- 14.8 KB
peakIntegrationSummaryPieChartsAndHistograms.R -rw-r--r-- 6.5 KB
peaksNearGeneSetsScatterPlots.R -rw-r--r-- 32.9 KB
permutationTestMotifColocalization.R -rw-r--r-- 19.1 KB
permutationTestMotifColocalization_v2.R -rw-r--r-- 6.4 KB
permutationTestNPeaksNearby.R -rw-r--r-- 2.6 KB
permutationTestPeakMutualExclusivityScore.R -rw-r--r-- 2.7 KB
permutationTestSuperadditivePeakFinding.R -rw-r--r-- 2.7 KB
plotAllGenesAddVsMultPrediction.R -rw-r--r-- 8.1 KB
plotGridOfImmunofluorescenceNuclearIntensities.R -rw-r--r-- 12.6 KB
printCvalsForBeeswarmPlotGenes.R -rw-r--r-- 597 bytes
rnaSeqDEGeneBeeSwarms.jl -rw-r--r-- 5.8 KB
rnaSeqPCA.R -rw-r--r-- 7.4 KB
subtractSimulatedAdditiveFromObservedCvalHistogram.R -rw-r--r-- 32.9 KB
visualizeNearbyDoseChangesATACseq.R -rw-r--r-- 11.2 KB
visualizeNearbyDoseChangesATACseq_v2.R -rw-r--r-- 18.0 KB
visualizeNearbyDoseChangesATACseq_v3.R -rw-r--r-- 19.4 KB
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