| 709eaa2 | coke6162 | 24 February 2023, 19:54:18 UTC | updated to clarify Qiao vs McCann | 24 February 2023, 19:54:18 UTC |
| 38c0972 | coke6162 | 24 February 2023, 19:47:08 UTC | updated | 24 February 2023, 19:47:08 UTC |
| f7d8239 | coke6162 | 16 February 2023, 20:43:07 UTC | fixed | 16 February 2023, 20:43:07 UTC |
| edf1a70 | coke6162 | 07 February 2023, 03:21:50 UTC | added ABC | 07 February 2023, 03:21:50 UTC |
| d34d9ee | coke6162 | 07 February 2023, 03:17:57 UTC | removed info | 07 February 2023, 03:17:57 UTC |
| ec0280d | coke6162 | 07 February 2023, 03:16:19 UTC | formatting & typo | 07 February 2023, 03:16:19 UTC |
| 8a0c8f2 | coke6162 | 07 February 2023, 03:15:46 UTC | formatting & typo | 07 February 2023, 03:15:46 UTC |
| 3c19629 | coke6162 | 07 February 2023, 03:15:17 UTC | formatting | 07 February 2023, 03:15:17 UTC |
| 66b2d8c | coke6162 | 07 February 2023, 03:14:34 UTC | typo and formatting | 07 February 2023, 03:14:34 UTC |
| 779fda8 | coke6162 | 07 February 2023, 03:13:51 UTC | formatting | 07 February 2023, 03:13:51 UTC |
| 986e42f | coke6162 | 07 February 2023, 03:12:55 UTC | updated to include orthology analysis | 07 February 2023, 03:12:55 UTC |
| 1994a41 | coke6162 | 07 February 2023, 03:08:05 UTC | updated | 07 February 2023, 03:08:05 UTC |
| 8a79cfa | coke6162 | 07 February 2023, 03:05:20 UTC | added repos | 07 February 2023, 03:05:20 UTC |
| bf4530d | coke6162 | 06 February 2023, 23:50:03 UTC | updated with URLs | 06 February 2023, 23:50:03 UTC |
| c3e66eb | coke6162 | 06 February 2023, 23:48:10 UTC | added repos | 06 February 2023, 23:48:10 UTC |
| d630128 | coke6162 | 06 February 2023, 22:33:13 UTC | added subdir | 06 February 2023, 22:33:13 UTC |
| 48a81b1 | coke6162 | 06 February 2023, 21:44:34 UTC | updated | 06 February 2023, 21:44:34 UTC |
| 9eac307 | coke6162 | 06 February 2023, 21:29:44 UTC | fixed versions | 06 February 2023, 21:29:44 UTC |
| 68e0393 | coke6162 | 06 February 2023, 21:15:26 UTC | fixed URL | 06 February 2023, 21:15:26 UTC |
| dbe5c5c | coke6162 | 06 February 2023, 21:14:54 UTC | updated with URLs | 06 February 2023, 21:14:54 UTC |
| 293efaf | coke6162 | 06 February 2023, 21:13:30 UTC | added | 06 February 2023, 21:13:30 UTC |
| 0cf0a88 | coke6162 | 06 February 2023, 20:52:32 UTC | updated samtools version | 06 February 2023, 20:52:32 UTC |
| 5ea01da | coke6162 | 06 February 2023, 20:50:02 UTC | updated samtools version | 06 February 2023, 20:50:02 UTC |
| 485d9a3 | coke6162 | 06 February 2023, 20:47:57 UTC | updated samtools version & index subdir | 06 February 2023, 20:47:57 UTC |
| 8e89920 | coke6162 | 06 February 2023, 20:34:08 UTC | removed variables and fixed bugs | 06 February 2023, 20:34:08 UTC |
| 7e2f551 | coke6162 | 06 February 2023, 20:24:35 UTC | added commit URLs | 06 February 2023, 20:24:35 UTC |
| 38dd389 | coke6162 | 05 February 2023, 03:18:10 UTC | Merge branch 'main' of github.com:coke6162/B2_SINE_enhancers into main | 05 February 2023, 03:18:10 UTC |
| 2cbb984 | coke6162 | 05 February 2023, 03:16:53 UTC | added | 05 February 2023, 03:16:53 UTC |
| ce5373f | coke6162 | 05 February 2023, 03:15:12 UTC | updated | 05 February 2023, 03:15:12 UTC |
| 97d956c | coke6162 | 05 February 2023, 03:12:56 UTC | added isoform analysis scripts | 05 February 2023, 03:12:56 UTC |
| 3ed2bbe | coke6162 | 29 July 2022, 21:55:29 UTC | updated | 29 July 2022, 21:55:29 UTC |
| b027cfa | coke6162 | 29 July 2022, 21:55:29 UTC | updated | 29 July 2022, 21:55:29 UTC |
| 12f821f | coke6162 | 29 July 2022, 17:34:21 UTC | fixed strandness argument | 29 July 2022, 17:34:21 UTC |
| ccb4ad9 | coke6162 | 29 July 2022, 17:34:21 UTC | fixed strandness argument | 29 July 2022, 17:34:21 UTC |
| 58dbc1e | coke6162 | 27 July 2022, 22:00:49 UTC | updated | 27 July 2022, 22:00:49 UTC |
| a99a0e0 | coke6162 | 27 July 2022, 22:00:49 UTC | updated | 27 July 2022, 22:00:49 UTC |
| 57d0381 | coke6162 | 27 July 2022, 21:58:13 UTC | updated | 27 July 2022, 21:58:13 UTC |
| f2649bc | coke6162 | 27 July 2022, 21:58:13 UTC | updated | 27 July 2022, 21:58:13 UTC |
| 2517837 | coke6162 | 27 July 2022, 21:58:08 UTC | added script to identify TEs that overlap STAT1 summits | 27 July 2022, 21:58:08 UTC |
| b0b9c31 | coke6162 | 27 July 2022, 21:58:08 UTC | added script to identify TEs that overlap STAT1 summits | 27 July 2022, 21:58:08 UTC |
| 0cc6de8 | coke6162 | 27 July 2022, 21:56:33 UTC | updated | 27 July 2022, 21:56:33 UTC |
| db6da2a | coke6162 | 27 July 2022, 21:56:33 UTC | updated | 27 July 2022, 21:56:33 UTC |
| 1035669 | coke6162 | 27 July 2022, 21:56:25 UTC | added ISRE motif | 27 July 2022, 21:56:25 UTC |
| 9f60107 | coke6162 | 27 July 2022, 21:56:25 UTC | added ISRE motif | 27 July 2022, 21:56:25 UTC |
| 4e41164 | coke6162 | 27 July 2022, 21:56:19 UTC | Added ISRE motif | 27 July 2022, 21:56:19 UTC |
| d40eb89 | coke6162 | 27 July 2022, 21:56:19 UTC | Added ISRE motif | 27 July 2022, 21:56:19 UTC |
| e733c57 | coke6162 | 27 July 2022, 21:56:12 UTC | added ISRE motif PWM | 27 July 2022, 21:56:12 UTC |
| e9cbf08 | coke6162 | 27 July 2022, 21:56:12 UTC | added ISRE motif PWM | 27 July 2022, 21:56:12 UTC |
| ae11ed6 | coke6162 | 27 July 2022, 21:40:14 UTC | removed reference to utility script | 27 July 2022, 21:40:14 UTC |
| c2a3834 | coke6162 | 27 July 2022, 21:40:14 UTC | removed reference to utility script | 27 July 2022, 21:40:14 UTC |
| 634167f | coke6162 | 27 July 2022, 21:39:59 UTC | replaced util script with awk command | 27 July 2022, 21:39:59 UTC |
| 83f43cf | coke6162 | 27 July 2022, 21:39:59 UTC | replaced util script with awk command | 27 July 2022, 21:39:59 UTC |
| 015e00a | coke6162 | 27 July 2022, 21:39:47 UTC | removed | 27 July 2022, 21:39:47 UTC |
| 953ce03 | coke6162 | 27 July 2022, 21:39:47 UTC | removed | 27 July 2022, 21:39:47 UTC |
| 8bd6e7e | coke6162 | 27 July 2022, 21:39:30 UTC | removed | 27 July 2022, 21:39:30 UTC |
| e31b1c7 | coke6162 | 27 July 2022, 21:39:30 UTC | removed | 27 July 2022, 21:39:30 UTC |
| 088ff8c | coke6162 | 27 July 2022, 21:39:23 UTC | made script to get subset of B2 elements for box and whisker plot | 27 July 2022, 21:39:23 UTC |
| 0eb99a8 | coke6162 | 27 July 2022, 21:39:23 UTC | made script to get subset of B2 elements for box and whisker plot | 27 July 2022, 21:39:23 UTC |
| 61dcf5a | coke6162 | 27 July 2022, 21:39:03 UTC | made script to get top GAS pval overlapping B2 elements | 27 July 2022, 21:39:03 UTC |
| f6dad87 | coke6162 | 27 July 2022, 21:39:03 UTC | made script to get top GAS pval overlapping B2 elements | 27 July 2022, 21:39:03 UTC |
| be58814 | coke6162 | 27 July 2022, 21:38:36 UTC | made script to run FIMO against subset of B2 elements with pval threshold of 1 | 27 July 2022, 21:38:36 UTC |
| d9097f9 | coke6162 | 27 July 2022, 21:38:36 UTC | made script to run FIMO against subset of B2 elements with pval threshold of 1 | 27 July 2022, 21:38:36 UTC |
| a952290 | coke6162 | 27 July 2022, 21:38:16 UTC | made R script to generate box and whisker plot | 27 July 2022, 21:38:16 UTC |
| d61cc48 | coke6162 | 27 July 2022, 21:38:16 UTC | made R script to generate box and whisker plot | 27 July 2022, 21:38:16 UTC |
| 1b0c454 | coke6162 | 27 July 2022, 21:37:56 UTC | updated README | 27 July 2022, 21:37:56 UTC |
| f15c88b | coke6162 | 27 July 2022, 21:37:56 UTC | updated README | 27 July 2022, 21:37:56 UTC |
| 0a290e4 | coke6162 | 27 July 2022, 16:35:50 UTC | updated README | 27 July 2022, 16:35:50 UTC |
| 8db907a | coke6162 | 27 July 2022, 16:35:50 UTC | updated README | 27 July 2022, 16:35:50 UTC |
| 7e05df5 | coke6162 | 27 July 2022, 16:35:08 UTC | updated README | 27 July 2022, 16:35:08 UTC |
| db29585 | coke6162 | 27 July 2022, 16:35:08 UTC | updated README | 27 July 2022, 16:35:08 UTC |
| 5069aff | coke6162 | 27 July 2022, 00:08:52 UTC | added PWM file | 27 July 2022, 00:08:52 UTC |
| 8efd631 | coke6162 | 27 July 2022, 00:08:52 UTC | added PWM file | 27 July 2022, 00:08:52 UTC |
| 03547bc | coke6162 | 27 July 2022, 00:08:14 UTC | added fimo_analysis.py utility script | 27 July 2022, 00:08:14 UTC |
| eb18568 | coke6162 | 27 July 2022, 00:08:14 UTC | added fimo_analysis.py utility script | 27 July 2022, 00:08:14 UTC |
| 38865aa | coke6162 | 27 July 2022, 00:08:02 UTC | added fimo_analysis.py utility script | 27 July 2022, 00:08:02 UTC |
| e8f3706 | coke6162 | 27 July 2022, 00:08:02 UTC | added fimo_analysis.py utility script | 27 July 2022, 00:08:02 UTC |
| 6d285c0 | coke6162 | 26 July 2022, 21:45:32 UTC | renamed script | 26 July 2022, 21:45:32 UTC |
| cf76f16 | coke6162 | 26 July 2022, 21:45:32 UTC | renamed script | 26 July 2022, 21:45:32 UTC |
| 64a7a59 | coke6162 | 26 July 2022, 21:42:18 UTC | renamed | 26 July 2022, 21:42:18 UTC |
| 7a34ab8 | coke6162 | 26 July 2022, 21:42:18 UTC | renamed | 26 July 2022, 21:42:18 UTC |
| 1584131 | coke6162 | 26 July 2022, 21:41:56 UTC | updated | 26 July 2022, 21:41:56 UTC |
| 6508e50 | coke6162 | 26 July 2022, 21:41:56 UTC | updated | 26 July 2022, 21:41:56 UTC |
| 7505fa4 | coke6162 | 26 July 2022, 20:37:39 UTC | added bam_order.txt to ref list | 26 July 2022, 20:37:39 UTC |
| 9e3325a | coke6162 | 26 July 2022, 20:37:39 UTC | added bam_order.txt to ref list | 26 July 2022, 20:37:39 UTC |
| 03ab338 | coke6162 | 26 July 2022, 20:36:02 UTC | added qPCR script | 26 July 2022, 20:36:02 UTC |
| 6b4bf14 | coke6162 | 26 July 2022, 20:36:02 UTC | added qPCR script | 26 July 2022, 20:36:02 UTC |
| d039e92 | coke6162 | 26 July 2022, 20:35:54 UTC | added RNA-seq repos | 26 July 2022, 20:35:54 UTC |
| ec1c06f | coke6162 | 26 July 2022, 20:35:54 UTC | added RNA-seq repos | 26 July 2022, 20:35:54 UTC |
| aabe527 | coke6162 | 26 July 2022, 20:35:46 UTC | added CUT&TAG repos | 26 July 2022, 20:35:46 UTC |
| f5c8749 | coke6162 | 26 July 2022, 20:35:46 UTC | added CUT&TAG repos | 26 July 2022, 20:35:46 UTC |
| eeb9884 | coke6162 | 26 July 2022, 20:26:56 UTC | updated README | 26 July 2022, 20:26:56 UTC |
| f6b1601 | coke6162 | 26 July 2022, 20:26:56 UTC | updated README | 26 July 2022, 20:26:56 UTC |
| 9be3c69 | coke6162 | 26 July 2022, 20:24:23 UTC | fixed motif bigwig names | 26 July 2022, 20:24:23 UTC |
| e0f70b4 | coke6162 | 26 July 2022, 20:24:23 UTC | fixed motif bigwig names | 26 July 2022, 20:24:23 UTC |
| 0f5107d | coke6162 | 26 July 2022, 20:20:08 UTC | updated README | 26 July 2022, 20:20:08 UTC |
| 934a4de | coke6162 | 26 July 2022, 20:20:08 UTC | updated README | 26 July 2022, 20:20:08 UTC |
| 06be221 | coke6162 | 26 July 2022, 20:18:38 UTC | updated README | 26 July 2022, 20:18:38 UTC |
| 0aa8d91 | coke6162 | 26 July 2022, 20:18:38 UTC | updated README | 26 July 2022, 20:18:38 UTC |
| e121680 | coke6162 | 26 July 2022, 20:13:49 UTC | made repos | 26 July 2022, 20:13:49 UTC |
| fa2ef07 | coke6162 | 26 July 2022, 20:13:49 UTC | made repos | 26 July 2022, 20:13:49 UTC |
