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https://github.com/coke6162/B2_SINE_enhancers
27 May 2023, 15:55:35 UTC
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RevisionAuthorDateMessageCommit Date
709eaa2 coke616224 February 2023, 19:54:18 UTCupdated to clarify Qiao vs McCann24 February 2023, 19:54:18 UTC
38c0972 coke616224 February 2023, 19:47:08 UTCupdated24 February 2023, 19:47:08 UTC
f7d8239 coke616216 February 2023, 20:43:07 UTCfixed16 February 2023, 20:43:07 UTC
edf1a70 coke616207 February 2023, 03:21:50 UTCadded ABC07 February 2023, 03:21:50 UTC
d34d9ee coke616207 February 2023, 03:17:57 UTCremoved info07 February 2023, 03:17:57 UTC
ec0280d coke616207 February 2023, 03:16:19 UTCformatting & typo07 February 2023, 03:16:19 UTC
8a0c8f2 coke616207 February 2023, 03:15:46 UTCformatting & typo07 February 2023, 03:15:46 UTC
3c19629 coke616207 February 2023, 03:15:17 UTCformatting07 February 2023, 03:15:17 UTC
66b2d8c coke616207 February 2023, 03:14:34 UTCtypo and formatting07 February 2023, 03:14:34 UTC
779fda8 coke616207 February 2023, 03:13:51 UTCformatting07 February 2023, 03:13:51 UTC
986e42f coke616207 February 2023, 03:12:55 UTCupdated to include orthology analysis07 February 2023, 03:12:55 UTC
1994a41 coke616207 February 2023, 03:08:05 UTCupdated07 February 2023, 03:08:05 UTC
8a79cfa coke616207 February 2023, 03:05:20 UTCadded repos07 February 2023, 03:05:20 UTC
bf4530d coke616206 February 2023, 23:50:03 UTCupdated with URLs06 February 2023, 23:50:03 UTC
c3e66eb coke616206 February 2023, 23:48:10 UTCadded repos06 February 2023, 23:48:10 UTC
d630128 coke616206 February 2023, 22:33:13 UTCadded subdir06 February 2023, 22:33:13 UTC
48a81b1 coke616206 February 2023, 21:44:34 UTCupdated06 February 2023, 21:44:34 UTC
9eac307 coke616206 February 2023, 21:29:44 UTCfixed versions06 February 2023, 21:29:44 UTC
68e0393 coke616206 February 2023, 21:15:26 UTCfixed URL06 February 2023, 21:15:26 UTC
dbe5c5c coke616206 February 2023, 21:14:54 UTCupdated with URLs06 February 2023, 21:14:54 UTC
293efaf coke616206 February 2023, 21:13:30 UTCadded06 February 2023, 21:13:30 UTC
0cf0a88 coke616206 February 2023, 20:52:32 UTCupdated samtools version06 February 2023, 20:52:32 UTC
5ea01da coke616206 February 2023, 20:50:02 UTCupdated samtools version06 February 2023, 20:50:02 UTC
485d9a3 coke616206 February 2023, 20:47:57 UTCupdated samtools version & index subdir06 February 2023, 20:47:57 UTC
8e89920 coke616206 February 2023, 20:34:08 UTCremoved variables and fixed bugs06 February 2023, 20:34:08 UTC
7e2f551 coke616206 February 2023, 20:24:35 UTCadded commit URLs06 February 2023, 20:24:35 UTC
38dd389 coke616205 February 2023, 03:18:10 UTCMerge branch 'main' of github.com:coke6162/B2_SINE_enhancers into main05 February 2023, 03:18:10 UTC
2cbb984 coke616205 February 2023, 03:16:53 UTCadded05 February 2023, 03:16:53 UTC
ce5373f coke616205 February 2023, 03:15:12 UTCupdated05 February 2023, 03:15:12 UTC
97d956c coke616205 February 2023, 03:12:56 UTCadded isoform analysis scripts05 February 2023, 03:12:56 UTC
3ed2bbe coke616229 July 2022, 21:55:29 UTCupdated29 July 2022, 21:55:29 UTC
b027cfa coke616229 July 2022, 21:55:29 UTCupdated29 July 2022, 21:55:29 UTC
12f821f coke616229 July 2022, 17:34:21 UTCfixed strandness argument29 July 2022, 17:34:21 UTC
ccb4ad9 coke616229 July 2022, 17:34:21 UTCfixed strandness argument29 July 2022, 17:34:21 UTC
58dbc1e coke616227 July 2022, 22:00:49 UTCupdated27 July 2022, 22:00:49 UTC
a99a0e0 coke616227 July 2022, 22:00:49 UTCupdated27 July 2022, 22:00:49 UTC
57d0381 coke616227 July 2022, 21:58:13 UTCupdated27 July 2022, 21:58:13 UTC
f2649bc coke616227 July 2022, 21:58:13 UTCupdated27 July 2022, 21:58:13 UTC
2517837 coke616227 July 2022, 21:58:08 UTCadded script to identify TEs that overlap STAT1 summits27 July 2022, 21:58:08 UTC
b0b9c31 coke616227 July 2022, 21:58:08 UTCadded script to identify TEs that overlap STAT1 summits27 July 2022, 21:58:08 UTC
0cc6de8 coke616227 July 2022, 21:56:33 UTCupdated27 July 2022, 21:56:33 UTC
db6da2a coke616227 July 2022, 21:56:33 UTCupdated27 July 2022, 21:56:33 UTC
1035669 coke616227 July 2022, 21:56:25 UTCadded ISRE motif27 July 2022, 21:56:25 UTC
9f60107 coke616227 July 2022, 21:56:25 UTCadded ISRE motif27 July 2022, 21:56:25 UTC
4e41164 coke616227 July 2022, 21:56:19 UTCAdded ISRE motif27 July 2022, 21:56:19 UTC
d40eb89 coke616227 July 2022, 21:56:19 UTCAdded ISRE motif27 July 2022, 21:56:19 UTC
e733c57 coke616227 July 2022, 21:56:12 UTCadded ISRE motif PWM27 July 2022, 21:56:12 UTC
e9cbf08 coke616227 July 2022, 21:56:12 UTCadded ISRE motif PWM27 July 2022, 21:56:12 UTC
ae11ed6 coke616227 July 2022, 21:40:14 UTCremoved reference to utility script27 July 2022, 21:40:14 UTC
c2a3834 coke616227 July 2022, 21:40:14 UTCremoved reference to utility script27 July 2022, 21:40:14 UTC
634167f coke616227 July 2022, 21:39:59 UTCreplaced util script with awk command27 July 2022, 21:39:59 UTC
83f43cf coke616227 July 2022, 21:39:59 UTCreplaced util script with awk command27 July 2022, 21:39:59 UTC
015e00a coke616227 July 2022, 21:39:47 UTCremoved27 July 2022, 21:39:47 UTC
953ce03 coke616227 July 2022, 21:39:47 UTCremoved27 July 2022, 21:39:47 UTC
8bd6e7e coke616227 July 2022, 21:39:30 UTCremoved27 July 2022, 21:39:30 UTC
e31b1c7 coke616227 July 2022, 21:39:30 UTCremoved27 July 2022, 21:39:30 UTC
088ff8c coke616227 July 2022, 21:39:23 UTCmade script to get subset of B2 elements for box and whisker plot27 July 2022, 21:39:23 UTC
0eb99a8 coke616227 July 2022, 21:39:23 UTCmade script to get subset of B2 elements for box and whisker plot27 July 2022, 21:39:23 UTC
61dcf5a coke616227 July 2022, 21:39:03 UTCmade script to get top GAS pval overlapping B2 elements27 July 2022, 21:39:03 UTC
f6dad87 coke616227 July 2022, 21:39:03 UTCmade script to get top GAS pval overlapping B2 elements27 July 2022, 21:39:03 UTC
be58814 coke616227 July 2022, 21:38:36 UTCmade script to run FIMO against subset of B2 elements with pval threshold of 127 July 2022, 21:38:36 UTC
d9097f9 coke616227 July 2022, 21:38:36 UTCmade script to run FIMO against subset of B2 elements with pval threshold of 127 July 2022, 21:38:36 UTC
a952290 coke616227 July 2022, 21:38:16 UTCmade R script to generate box and whisker plot27 July 2022, 21:38:16 UTC
d61cc48 coke616227 July 2022, 21:38:16 UTCmade R script to generate box and whisker plot27 July 2022, 21:38:16 UTC
1b0c454 coke616227 July 2022, 21:37:56 UTCupdated README27 July 2022, 21:37:56 UTC
f15c88b coke616227 July 2022, 21:37:56 UTCupdated README27 July 2022, 21:37:56 UTC
0a290e4 coke616227 July 2022, 16:35:50 UTCupdated README27 July 2022, 16:35:50 UTC
8db907a coke616227 July 2022, 16:35:50 UTCupdated README27 July 2022, 16:35:50 UTC
7e05df5 coke616227 July 2022, 16:35:08 UTCupdated README27 July 2022, 16:35:08 UTC
db29585 coke616227 July 2022, 16:35:08 UTCupdated README27 July 2022, 16:35:08 UTC
5069aff coke616227 July 2022, 00:08:52 UTCadded PWM file27 July 2022, 00:08:52 UTC
8efd631 coke616227 July 2022, 00:08:52 UTCadded PWM file27 July 2022, 00:08:52 UTC
03547bc coke616227 July 2022, 00:08:14 UTCadded fimo_analysis.py utility script27 July 2022, 00:08:14 UTC
eb18568 coke616227 July 2022, 00:08:14 UTCadded fimo_analysis.py utility script27 July 2022, 00:08:14 UTC
38865aa coke616227 July 2022, 00:08:02 UTCadded fimo_analysis.py utility script27 July 2022, 00:08:02 UTC
e8f3706 coke616227 July 2022, 00:08:02 UTCadded fimo_analysis.py utility script27 July 2022, 00:08:02 UTC
6d285c0 coke616226 July 2022, 21:45:32 UTCrenamed script26 July 2022, 21:45:32 UTC
cf76f16 coke616226 July 2022, 21:45:32 UTCrenamed script26 July 2022, 21:45:32 UTC
64a7a59 coke616226 July 2022, 21:42:18 UTCrenamed26 July 2022, 21:42:18 UTC
7a34ab8 coke616226 July 2022, 21:42:18 UTCrenamed26 July 2022, 21:42:18 UTC
1584131 coke616226 July 2022, 21:41:56 UTCupdated26 July 2022, 21:41:56 UTC
6508e50 coke616226 July 2022, 21:41:56 UTCupdated26 July 2022, 21:41:56 UTC
7505fa4 coke616226 July 2022, 20:37:39 UTCadded bam_order.txt to ref list26 July 2022, 20:37:39 UTC
9e3325a coke616226 July 2022, 20:37:39 UTCadded bam_order.txt to ref list26 July 2022, 20:37:39 UTC
03ab338 coke616226 July 2022, 20:36:02 UTCadded qPCR script26 July 2022, 20:36:02 UTC
6b4bf14 coke616226 July 2022, 20:36:02 UTCadded qPCR script26 July 2022, 20:36:02 UTC
d039e92 coke616226 July 2022, 20:35:54 UTCadded RNA-seq repos26 July 2022, 20:35:54 UTC
ec1c06f coke616226 July 2022, 20:35:54 UTCadded RNA-seq repos26 July 2022, 20:35:54 UTC
aabe527 coke616226 July 2022, 20:35:46 UTCadded CUT&TAG repos26 July 2022, 20:35:46 UTC
f5c8749 coke616226 July 2022, 20:35:46 UTCadded CUT&TAG repos26 July 2022, 20:35:46 UTC
eeb9884 coke616226 July 2022, 20:26:56 UTCupdated README26 July 2022, 20:26:56 UTC
f6b1601 coke616226 July 2022, 20:26:56 UTCupdated README26 July 2022, 20:26:56 UTC
9be3c69 coke616226 July 2022, 20:24:23 UTCfixed motif bigwig names26 July 2022, 20:24:23 UTC
e0f70b4 coke616226 July 2022, 20:24:23 UTCfixed motif bigwig names26 July 2022, 20:24:23 UTC
0f5107d coke616226 July 2022, 20:20:08 UTCupdated README26 July 2022, 20:20:08 UTC
934a4de coke616226 July 2022, 20:20:08 UTCupdated README26 July 2022, 20:20:08 UTC
06be221 coke616226 July 2022, 20:18:38 UTCupdated README26 July 2022, 20:18:38 UTC
0aa8d91 coke616226 July 2022, 20:18:38 UTCupdated README26 July 2022, 20:18:38 UTC
e121680 coke616226 July 2022, 20:13:49 UTCmade repos26 July 2022, 20:13:49 UTC
fa2ef07 coke616226 July 2022, 20:13:49 UTCmade repos26 July 2022, 20:13:49 UTC
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