https://github.com/michal-brylinski/efindsite
Revision 72f012435573ecfab2dc5c5478bf16ec459f5937 authored by Michal Brylinski on 25 October 2018, 17:56:05 UTC, committed by GitHub on 25 October 2018, 17:56:05 UTC
1 parent 92852e9
Tip revision: 72f012435573ecfab2dc5c5478bf16ec459f5937 authored by Michal Brylinski on 25 October 2018, 17:56:05 UTC
Update 13gsA.profile
Update 13gsA.profile
Tip revision: 72f0124
list.C
/*
===============================================================================
___________.__ .____________.__ __
____\_ _____/|__| ____ __| _/ _____/|__|/ |_ ____
_/ __ \| __) | |/ \ / __ |\_____ \ | \ __\/ __ \
\ ___/| \ | | | \/ /_/ |/ \| || | \ ___/
\___ >___ / |__|___| /\____ /_______ /|__||__| \___ >
\/ \/ \/ \/ \/ \/
eFindSite - ligand-binding site prediction from meta-threading
Computational Systems Biology Group
Department of Biological Sciences
Center for Computation & Technology
Louisiana State University
407 Choppin Hall, Baton Rouge, LA 70803, USA
http://www.brylinski.org
Report bugs to michal@brylinski.org
Copyright 2013 Michal Brylinski
This file is part of eFindSite.
eFindSite is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
eFindSite is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License
along with eFindSite. If not, see <http://www.gnu.org/licenses/>.
===============================================================================
*/
#include "list.h"
using namespace std;
void getList( string templates_name, list<string> &template_list, map<string,double> &template_prob1, map<string,double> &template_prob2 )
{
string line1;
ifstream l1_file( templates_name.c_str() );
if ( !l1_file.is_open() ) { cout << "Cannot open " << templates_name << endl; exit(EXIT_FAILURE); }
while (getline(l1_file,line1))
{
istringstream iss1(line1);
int iss2 = -1;
std::string template_id;
double prob1[2];
prob1[0] = 1.0;
prob1[1] = 1.0;
while ( !iss1.eof() )
{
string iss3;
getline( iss1, iss3, ' ' );
if ( iss2 < 0 )
template_id = iss3;
else
prob1[iss2] = atof(iss3.c_str());
iss2++;
}
if ( prob1[0] < 0.001 )
prob1[0] = 0.001;
if ( prob1[0] > 1.0 )
prob1[0] = 1.0;
if ( prob1[1] < 0.001 )
prob1[1] = 0.001;
if ( prob1[1] > 1.0 )
prob1[1] = 1.0;
template_prob1.insert( pair<string,double>(template_id, prob1[0]) );
template_prob2.insert( pair<string,double>(template_id, prob1[1]) );
template_list.push_back( template_id );
}
l1_file.close();
}
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