Revision 74628305678f30d5b126745e5c6cd6cec4091c12 authored by BrionChristian on 03 July 2020, 02:17:14 UTC, committed by BrionChristian on 03 July 2020, 02:17:14 UTC
Shell script example for read processing
1 parent e445af8
compa_GFPdf.txt
genes names chr brionmaxpos briondeltaAF brionLOD repnum albertmaxpos albertdeltaAF albertLOD correspond channel
YGL202W ARO8 1 143400 -0.102940415047245 4.84 2 143624 0.0370812432394598 0 unique_brion gfp
YGL202W ARO8 2 134800 0.113296939819358 7.93 1 135186 0.0692291275843929 0 unique_brion gfp
YGL202W ARO8 4 171200 -0.0784216395089998 3.88 1 171295 0.0755545794230673 0 unique_brion gfp
YGL202W ARO8 4 691900 0.0894682709006207 5.135 1 691928 -0.0256131240805741 0 unique_brion gfp
YGL202W ARO8 4 998800 0.0542601659667072 3.62 1 998625 0.0320098204140928 0 unique_brion gfp
YGL202W ARO8 5 385000 -0.113173625874381 8.6325 2 384152 0.0327740413929124 0 unique_brion gfp
YGL202W ARO8 8 435600 -0.102462772617645 8.0775 2 422200 -0.1973176751 21.48 together gfp
YGL202W ARO8 10 157500 -0.102332786740391 6.67 1 157483 -0.0556556000421219 0 unique_brion gfp
YGL202W ARO8 11 235250 -0.200318690184479 24.52 2 235209 -0.0221193880133727 0 unique_brion gfp
YGL202W ARO8 13 32400 -0.110148322176128 4.525 2 66400 0.1643255908 14.63 oposite gfp
YGL202W ARO8 13 250800 0.127631795785801 10.08 1 250460 0.0100873168548865 0 unique_brion gfp
YGL202W ARO8 13 710750 0.0932195739876216 6.2075 2 711469 0.0499719488455464 0 unique_brion gfp
YGL202W ARO8 14 162150 -0.402839572676455 85.4725 2 163968 -0.0368522607003203 0 unique_brion gfp
YGL202W ARO8 14 468100 0.180910727113932 14.585 2 468490 0.0215431835790246 0 unique_brion gfp
YGL202W ARO8 15 148000 0.0899854885038792 3.48 2 147981 0.0737744899366147 0 unique_brion gfp
YGL202W ARO8 15 703850 0.149388611399466 13.1525 2 703125 0.0278282757424956 0 unique_brion gfp
YGL202W ARO8 16 176400 0.079522294509663 4.055 1 176476 0.0292363369004625 0 unique_brion gfp
YGL202W ARO8 4 614900 0.0805602268611071 4.62 1 614736 0.000282619275936615 0 unique_brion gfp
YGL202W ARO8 13 419900 0.0859515677202396 5.455 1 420097 0.0446708884058836 0 unique_brion gfp
YGL202W ARO8 16 281900 0.0641743948355862 3.33 1 281894 0.0453574351842358 0 unique_brion gfp
YGL202W ARO8 4 1463798 0.0317752729368731 1.045 0 1463800 -0.1610585962 10.25 unique_albert gfp
YGL202W ARO8 14 258590 -0.305997412260633 50.34 0 258500 -0.0908568336 4.56 unique_albert gfp
YDR099W BMH2 1 152400 -0.137931067643789 10.4025 2 152338 -0.0331279645812793 0 unique_brion gfp
YDR099W BMH2 4 174800 -0.0987388239217802 5.585 2 174832 0.0152852883083392 0 unique_brion gfp
YDR099W BMH2 5 425800 -0.0876056973949725 5.43 2 425829 -0.0239187285015857 0 unique_brion gfp
YDR099W BMH2 7 380900 0.102641748481628 4.9925 2 380673 0.023505767558491 0 unique_brion gfp
YDR099W BMH2 10 171900 -0.19505235047208 22.2375 2 171760 -0.0742245790992023 0 unique_brion gfp
YDR099W BMH2 10 643700 0.0847379755409108 3.7775 2 644087 0.0323477531080985 0 unique_brion gfp
YDR099W BMH2 11 305150 -0.308175867121632 60.4775 2 262200 -0.1536284132 11.87 together gfp
YDR099W BMH2 13 339650 0.130082127576784 9.8825 2 339642 0.0671908753937962 0 unique_brion gfp
YDR099W BMH2 14 225850 -0.123974896803257 10.0325 2 225777 -0.0585363234220744 0 unique_brion gfp
YDR099W BMH2 15 187800 -0.108764523030065 8.285 2 172400 -0.0882071083 4.54 together gfp
YDR099W BMH2 15 564700 -0.0850607357508295 7.09 1 564576 0.0303014775680782 0 unique_brion gfp
YDR099W BMH2 7 962982 -0.0239276176164365 0.745 0 963000 0.0857296395 5.11 unique_albert gfp
YDR099W BMH2 13 72351 0.0412755531532411 1.715 0 72400 0.2260244386 23.33 unique_albert gfp
YDR099W BMH2 14 464233 0.0543705719987349 1.7 0 464200 0.3442729701 53.67 unique_albert gfp
YLR286C CTS1 13 64400 0.154882276808663 14.165 2 64724 0 0 unique_brion gfp
YLR286C CTS1 10 377400 0.0467442587558858 3.605 1 377537 0 0 unique_brion gfp
YJR048W CYC1 5 397450 -0.107819666662278 7.1725 2 389100 -0.1332261122 8.74 together gfp
YJR048W CYC1 11 189300 -0.0973220142793763 7.7675 2 238100 -0.1461117585 7.76 together gfp
YJR048W CYC1 12 661850 -0.929638702983122 308.795 2 655600 -0.8410682667 197.09 together gfp
YJR048W CYC1 13 369050 0.13447999623811 10.4125 2 411100 -0.2671024028 28.95 oposite gfp
YJR048W CYC1 15 139800 -0.141655979245521 12.26 2 139908 -0.00920261791992825 0 unique_brion gfp
YJR048W CYC1 8 101020 0.0559152011659051 1.675 0 100800 0.1520733087 9.78 unique_albert gfp
YJR048W CYC1 8 409115 -0.0264897322577678 0.875 0 409100 -0.0965647879 5.11 unique_albert gfp
YJR048W CYC1 14 463554 0.0562430367518312 1.635 0 463200 -0.2805611152 40.58 unique_albert gfp
YDL022W GPD1 2 416816.666666667 -0.123835173364988 9.95611111111111 6 454300 -0.1795858233 13.67 together gfp
YDL022W GPD1 4 1109800 0.0633070662302374 3.2775 2 1109779 0.00348558506180626 0 unique_brion gfp
YDL022W GPD1 5 382650 0.146497212048185 14.1766666666667 6 382804 0.384092439910911 0 unique_brion gfp
YDL022W GPD1 7 161300 0.063719194752066 3.05055555555556 3 159711 0.0592422471925515 0 unique_brion gfp
YDL022W GPD1 8 362440 -0.0719673746634932 3.451 5 361903 -0.0808715415945939 0 unique_brion gfp
YDL022W GPD1 10 154016.666666667 -0.430413432051815 94.1813888888889 6 153500 -0.2301092373 22.11 together gfp
YDL022W GPD1 10 661066.666666667 0.13274523976617 10.8927777777778 6 661161 0.0660676668765868 0 unique_brion gfp
YDL022W GPD1 11 268500 -0.211428779577543 24.9427777777778 6 279400 -0.1814665187 12.09 together gfp
YDL022W GPD1 12 928500 0.0962856852678264 6.50555555555556 3 928625 0.0710791851486953 0 unique_brion gfp
YDL022W GPD1 13 253666.666666667 0.147029135687682 13.2241666666667 6 253667 0.0448904349010912 0 unique_brion gfp
YDL022W GPD1 14 524800 0.109683360473821 7.58777777777778 6 481600 0.1962016275 16.54 together gfp
YDL022W GPD1 15 157233.333333333 -0.0696536212535049 3.28444444444444 3 157219 -0.0757998031818582 0 unique_brion gfp
YDL022W GPD1 4 208160 -0.108453336915234 6.76733333333333 5 209792 -0.0758041571567167 0 unique_brion gfp
YDL022W GPD1 12 224633.333333333 -0.0642384661247763 3.79722222222222 3 166000 -0.1274864347 9.17 together gfp
YDL022W GPD1 12 689920 0.134269052878278 12.4776666666667 5 659300 0.249813958 27.24 together gfp
YDL022W GPD1 12 346500 -0.0734955662032177 3.58333333333333 1 347030 -0.0555193286143058 0 unique_brion gfp
YDL022W GPD1 1 32883 0.0311375066484855 0.881666666666667 0 32900 0.1406256189 7.67 unique_albert gfp
YDL022W GPD1 4 607474 -0.0513413054643587 1.39666666666667 0 607800 -0.1267843299 7.13 unique_albert gfp
YDL022W GPD1 5 504390 0.10410320542972 10.95 0 504300 0.5384041802 123.79 unique_albert gfp
YDL022W GPD1 13 129926 0.095218505068589 6.90833333333333 0 129700 0.1273627212 8.09 unique_albert gfp
YDL022W GPD1 15 585970 -0.0284085809897871 1.33 0 586100 0.1075499568 4.98 unique_albert gfp
YKR080W MTD1 7 391900 0.0920120552668315 5.335 1 392320 0.030088749218132 0 unique_brion gfp
YKR080W MTD1 8 176350 -0.141783112306394 13.145 2 167900 -0.2721764854 30.26 together gfp
YKR080W MTD1 10 181550 0.117909837302116 8.3375 2 251000 0.1118578801 5.27 together gfp
YKR080W MTD1 11 219000 -0.0721488762418634 3.435 1 219048 -0.0147632732563923 0 unique_brion gfp
YKR080W MTD1 13 136900 0.250960492636517 37.8925 2 103800 0.2505012817 30.31 together gfp
YKR080W MTD1 14 200700 -0.23095385535363 29.745 2 232800 -0.1408336052 10.48 together gfp
YKR080W MTD1 15 742300 0.0976650887309083 5.27 2 741454 0.0307493605311241 0 unique_brion gfp
YKR080W MTD1 7 530100 0.074370499333516 5.325 1 530312 0.0168659976111702 0 unique_brion gfp
YKR080W MTD1 13 885600 0.0748345550345995 3.41 1 885660 -0.0204247020957603 0 unique_brion gfp
YKR080W MTD1 2 259158 -0.0258096405235623 1.39 0 259100 0.0850007779 4.64 unique_albert gfp
YKR080W MTD1 2 456535 -0.0119004120873385 0.965 0 456600 0.1232047988 5.61 unique_albert gfp
YKR080W MTD1 4 1464119 -0.0354964117449009 1.58 0 1464100 -0.1913161229 16.57 unique_albert gfp
YKR080W MTD1 5 198538 0.0215666586834028 0.58 0 198400 -0.1246207251 6.02 unique_albert gfp
YKR080W MTD1 7 156252 0.0193742162813276 0.55 0 156500 -0.1099565735 5.79 unique_albert gfp
YKR080W MTD1 10 656567 -0.0265810372982268 0.745 0 656300 -0.2297054894 24.45 unique_albert gfp
YKR080W MTD1 14 597130 -0.0169027080145587 0.795 0 597100 -0.1175888899 6.46 unique_albert gfp
YKR080W MTD1 15 228074 0.00749265207767513 0.47 0 227800 0.1030333641 5.41 unique_albert gfp
YKR080W MTD1 15 900947 0.0266025220380798 1.16 0 902900 0.1089113214 4.6 unique_albert gfp
YFL039C NA 2 170300 -0.0862662249645874 4.24 1 170323 0 0 unique_brion gfp
YFL039C NA 5 211900 0.0748434389250101 3.39 1 211986 0 0 unique_brion gfp
YFL039C NA 7 203000 -0.0811579504720289 3.16 1 202963 0 0 unique_brion gfp
YFL039C NA 12 1055400 0.174571927291148 10.38 1 1055415 0 0 unique_brion gfp
YFL039C NA 13 74400 0.155394195829312 14.49 1 74436 0 0 unique_brion gfp
YFL039C NA 14 477700 -0.0993991656648512 5.1 1 478702 0 0 unique_brion gfp
YFL039C NA 15 183300 0.0899865743332606 3.61 1 182946 0 0 unique_brion gfp
YGL055W OLE1 1 43500 -0.285835835568403 32.6275 2 40100 -0.2148510141 24.37 together gfp
YGL055W OLE1 11 325400 -0.127433262863985 15.5 1 327672 -0.0399304458348818 0 unique_brion gfp
YGL055W OLE1 12 655100 -0.315607793428334 67.9725 2 655300 -0.4363188258 89.93 together gfp
YGL055W OLE1 13 62600 0.0904799334868153 4.8175 2 123900 0.1296590171 6.24 together gfp
YGL055W OLE1 13 389650 -0.0703543149411031 4.22 2 389516 -0.0245068259292786 0 unique_brion gfp
YGL055W OLE1 15 571950 -0.0874340043803269 5.8275 2 571946 0.0169018209789287 0 unique_brion gfp
YGL055W OLE1 10 700200 0.0650795235006076 3.49 1 699841 0.0325269081861828 0 unique_brion gfp
YGL055W OLE1 11 411000 -0.1676280133192 16.285 1 410994 -0.0295261484044138 0 unique_brion gfp
YGL055W OLE1 5 312465 -0.0089713078408977 0.46 0 312400 0.1131036669 7.53 unique_albert gfp
YGL055W OLE1 7 541808 -0.00433582191725064 0.425 0 541700 0.1145934478 6.56 unique_albert gfp
YGL055W OLE1 12 229358 -0.0275588247394615 0.765 0 230300 -0.1138535121 5.16 unique_albert gfp
YGL055W OLE1 14 480472 -0.00146380137568443 0.72 0 480300 0.1510810876 13.4 unique_albert gfp
YOR293W RPS10A 3 106400 0.0475440037369084 8.78 1 105429 0 0 unique_brion gfp
YOR293W RPS10A 5 58100 0.0172861452555053 5.2 1 58103 0 0 unique_brion gfp
YOR293W RPS10A 11 229900 -0.171844478397606 4.35 1 229803 0 0 unique_brion gfp
YOR293W RPS10A 13 88000 0.188021693948214 22.38 1 87907 0 0 unique_brion gfp
YOR293W RPS10A 14 217700 -0.0974573286027281 5.17 1 216648 0 0 unique_brion gfp
YOR293W RPS10A 15 138300 0.0771889576206052 5.18 1 138302 0 0 unique_brion gfp
YOR293W RPS10A 15 785000 0.0809527167672207 12.98 1 785051 0 0 unique_brion gfp
YOR293W RPS10A 16 453100 -0.116712460705829 3.04 1 453103 0 0 unique_brion gfp
YGR192C TDH3 1 155000 -0.202454440251549 14.49 1 154748 -0.105523792237936 0 unique_brion gfp
YGR192C TDH3 4 1521900 0.152106646398742 6.67 1 1521926 0.022728301337895 0 unique_brion gfp
YGR192C TDH3 5 383500 0.102921922480578 6.45 1 383539 0.0896685241835635 0 unique_brion gfp
YGR192C TDH3 7 361700 0.15805462592192 12.91 1 361550 0.102460317160115 0 unique_brion gfp
YGR192C TDH3 10 174800 -0.215490756877423 20.99 1 139900 -0.1326336849 8.31 together gfp
YGR192C TDH3 11 267600 -0.225095136468746 26.52 1 267200 -0.2499885203 22.12 together gfp
YGR192C TDH3 12 745000 0.112419622907072 7.01 1 744925 0.130494373743401 0 unique_brion gfp
YGR192C TDH3 13 105500 0.113165882147097 5.34 1 105409 0.0660822848797957 0 unique_brion gfp
YGR192C TDH3 13 404900 0.0959118253883678 4.5 1 405244 -0.0407770569657481 0 unique_brion gfp
YGR192C TDH3 14 475900 0.186433761035689 17.69 1 456200 0.1404794652 10.64 together gfp
YGR192C TDH3 15 12900 0.111572726337502 4.33 1 12876 0.10961083973282 0 unique_brion gfp
YGR192C TDH3 15 367600 -0.0752047712409131 3.51 1 367673 0.0589831755291004 0 unique_brion gfp
YGR192C TDH3 1 28844 0.0408793176002056 1.45 0 28200 -0.0914330794 5.53 unique_albert gfp
YGR192C TDH3 2 180607 -0.0176754737043942 0.54 0 180600 0.0870778534 4.91 unique_albert gfp
YGR192C TDH3 10 646496 0.00561677715802733 0.8 0 647400 -0.0995512627 5.04 unique_albert gfp
YGR192C TDH3 12 648649 0.104541901481688 4.34 0 648700 0.3571872128 52.1 unique_albert gfp
YGR192C TDH3 15 163253 -0.0133363944666739 0.46 0 163300 0.2762716915 35.1 unique_albert gfp
YLL028W TPO1 7 123000 -0.103415628941977 7.2625 2 130200 -0.1134347381 6.49 together gfp
YLL028W TPO1 7 495850 -0.159673359040145 14.355 2 475300 -0.3451670366 51.83 together gfp
YLL028W TPO1 12 682550 -0.232287098583001 31.3 2 682832 -0.0110958112660948 0 unique_brion gfp
YLL028W TPO1 14 442800 0.155122180470544 13.75 2 457000 0.1020355527 5.12 together gfp
YLL028W TPO1 15 146300 -0.820170154968355 291.7825 2 162300 -0.8613829258 191.31 together gfp
YLL028W TPO1 15 603300 0.103098650970983 8.57 1 612800 0.1320350799 8.35 together gfp
YLL028W TPO1 15 702200 0.0889108487137886 5.88 1 701451 0.0557275849558787 0 unique_brion gfp
YLL028W TPO1 2 175784 0.0122018668993533 0.5 0 175700 0.0870602188 5.1 unique_albert gfp
YLL028W TPO1 5 191306 -0.0655656807637079 1.905 0 191600 -0.1654215389 13.02 unique_albert gfp
YLL028W TPO1 10 160930 0.0406458465960321 1.695 0 160900 0.1507656193 10.83 unique_albert gfp
YLL028W TPO1 13 65230 -0.0375417192522457 1.595 0 65500 0.1376554067 10.95 unique_albert gfp
YKL035W UGP1 1 162000 -0.0852315061390689 3.565 2 160055 -0.00726258956108245 0 unique_brion gfp
YKL035W UGP1 4 76300 -0.0852305326731091 4.815 2 76253 -0.0293500821160059 0 unique_brion gfp
YKL035W UGP1 4 1040200 0.173377213391118 16.5511111111111 3 1040297 -0.0303332765004774 0 unique_brion gfp
YKL035W UGP1 7 355650 0.0831313939515499 3.71166666666667 2 355709 0.0589322600887729 0 unique_brion gfp
YKL035W UGP1 10 148566.666666667 -0.307309529860168 49.3077777777778 3 148289 -0.0533558659599357 0 unique_brion gfp
YKL035W UGP1 12 686366.666666667 0.241435943006726 30.6144444444444 3 632100 0.1652918756 14.93 together gfp
YKL035W UGP1 13 278733.333333333 0.087287073536748 5.50111111111111 3 278674 -0.000420208303249027 0 unique_brion gfp
YKL035W UGP1 14 484300 0.166145104324205 14.6144444444444 3 466900 0.2511974943 26.46 together gfp
YKL035W UGP1 15 162766.666666667 -0.213459249639876 23.6844444444444 3 158600 -0.2704768313 32.11 together gfp
YKL035W UGP1 10 657600 0.0737024648674612 6.8 1 657700 0.0539417695688866 0 unique_brion gfp
YKL035W UGP1 7 125700 0.0998132004911911 4.76666666666667 1 141300 0.1027503866 5.63 together gfp
YKL035W UGP1 1 40380 0.0540312389124279 0.753333333333333 0 40600 0.0864690778 4.8 unique_albert gfp
YKL035W UGP1 2 400486 -0.0563347471130857 2.35666666666667 0 400300 -0.1047001845 6.32 unique_albert gfp
YKL035W UGP1 4 593211 -0.0230418190955679 0.84 0 593200 -0.1412857139 9.48 unique_albert gfp
YKL035W UGP1 7 556096 0.0132432431863524 0.55 0 556600 0.0946592604 5.15 unique_albert gfp
YKL035W UGP1 8 149347 0.0233612927865973 0.996666666666667 0 149500 0.1312660508 4.65 unique_albert gfp
YKL035W UGP1 11 98707 0.0466666787041666 1.38333333333333 0 98400 0.125160351 10.49 unique_albert gfp
YKL035W UGP1 12 140997 -0.0664786582795333 2.45666666666667 0 140800 -0.1837863585 14.99 unique_albert gfp
YKL035W UGP1 12 969880 0.0654486687513239 4.31666666666667 0 969500 0.1470865434 8.03 unique_albert gfp
YKL035W UGP1 16 183482 -0.0378654031946703 1.86 0 185500 -0.1520794897 7.98 unique_albert gfp
YKL035W UGP1 16 499388 -0.0185332725731717 0.83 0 499500 -0.1385823033 12.86 unique_albert gfp
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