Revision 74628305678f30d5b126745e5c6cd6cec4091c12 authored by BrionChristian on 03 July 2020, 02:17:14 UTC, committed by BrionChristian on 03 July 2020, 02:17:14 UTC
Shell script example for read processing
1 parent e445af8
compa_mCHdf.txt
genes names chr brionmaxpos briondeltaAF brionLOD repnum albertmaxpos albertR albertLOD correspond channel
YGL202W ARO8 2 117250 0.106527181071754 6.345 2 117298 -0.0655487355921791 0 unique_brion mch
YGL202W ARO8 2 614800 -0.0918014046669312 5.5625 2 614131 -0.0804424878468511 0 unique_brion mch
YGL202W ARO8 4 96100 -0.0616584106321726 3.58 1 96217 0.0616525085121681 0 unique_brion mch
YGL202W ARO8 8 103200 -0.145199615877641 7.64 2 103046 0.0025805568948386 0 unique_brion mch
YGL202W ARO8 11 290800 -0.0607889887907242 3.855 2 292055 -0.0302558477490669 0 unique_brion mch
YGL202W ARO8 13 78200 -0.110180966033194 6.6425 2 78125 0.0768229226197777 0 unique_brion mch
YGL202W ARO8 14 462150 0.290398634232849 46.68 2 466588 0.207232146681648 9.64596770401069 together mch
YGL202W ARO8 15 572900 0.0601949990088187 5.215 1 573312 0.0562123327990527 0 unique_brion mch
YGL202W ARO8 14 377751 0.162013391223559 17.765 0 377751 0.407682979081512 39.9441094804216 unique_albert mch
YGL202W ARO8 4 690684 -0.00737031127951184 0.975 0 690684 0.133368680413801 3.94397282741467 unique_albert mch
YGL202W ARO8 16 202708 0.0560556699940351 2.305 0 202791 0.126224505864675 3.52943430095365 unique_albert mch
YGL202W ARO8 14 288822 0.0283711742348157 2.1 0 288822 -0.130295287226054 3.76274743055838 unique_albert mch
YGL202W ARO8 15 729380 -0.039120577219753 0.95 0 729380 0.137122889256633 4.17128673224778 unique_albert mch
YGL202W ARO8 12 665236 0.00164883911637935 0.485 0 665236 0.202997497458019 9.2474490686221 unique_albert mch
YGL202W ARO8 9 141321 0.00250768088451354 0.405 0 141022 -0.127272371731814 3.58876055464636 unique_albert mch
YDR099W BMH2 2 575500 -0.106611940886531 7.455 1 575460 0.00362308693223666 0 unique_brion mch
YDR099W BMH2 8 85200 -0.0792668244486913 3.855 1 83454 0.0484930702830653 0 unique_brion mch
YDR099W BMH2 13 64800 -0.0760412544059547 3.5575 2 65230 0.00255279744564637 0 unique_brion mch
YDR099W BMH2 14 469200 0.315885739560851 55.9475 2 461863 -0.133157059445648 3.93135412710134 oposite mch
YDR099W BMH2 15 545900 0.0712414133284644 4.51 1 492116 -0.133390953387308 3.94530214535942 oposite mch
YDR099W BMH2 12 684400 -0.0730602710747478 4.365 1 659350 -0.340704070947149 27.1148589651237 together mch
YDR099W BMH2 15 127240 -0.01688171427656 1.05 0 127240 -0.16036880919274 5.72558739294534 unique_albert mch
YDR099W BMH2 14 372376 0.163079533865196 19.76 0 372376 0.120290949942279 3.20303695318196 unique_albert mch
YDR099W BMH2 7 122047 -0.0133545853417846 0.795 0 122047 0.248412154273567 13.9971053203781 unique_albert mch
YDR099W BMH2 12 136527 0.0550299382157585 2.08 0 136527 -0.130832418642551 3.79410450816098 unique_albert mch
YLR286C CTS1 8 86500 -0.0753988668932218 4.66 1 115977 0.22556206204088 11.4751041326005 oposite mch
YLR286C CTS1 10 381350 0.0763576992790567 3.4575 2 381896 0.0181645446910717 0 unique_brion mch
YLR286C CTS1 14 466700 0.164685069414101 18.515 2 453089 0.178992914708946 7.15580126937866 together mch
YLR286C CTS1 4 156100 -0.0693476043889006 3.74 1 156110 0.0289965139566029 0 unique_brion mch
YLR286C CTS1 5 331400 -0.072260969172509 3.805 1 332072 0.0497031832217934 0 unique_brion mch
YLR286C CTS1 11 222800 -0.0670664423009744 3.415 1 223233 0.0243370193911635 0 unique_brion mch
YLR286C CTS1 13 68900 -0.0540620904459339 3.51 1 18907 -0.147276360573238 4.8189679672797 together mch
YLR286C CTS1 14 267161 0.0124815248228205 0.87 0 266760 0.128451340470793 3.65611512720922 unique_albert mch
YLR286C CTS1 1 45431 -0.0270146836871045 0.845 0 45522 0.183810483760261 7.55296393490465 unique_albert mch
YLR286C CTS1 16 501255 -0.00269861568582008 0.415 0 501255 -0.209366659787191 9.85024339595515 unique_albert mch
YLR286C CTS1 7 122120 -0.0112603151617856 0.525 0 122421 0.250526054015661 14.2442620520818 unique_albert mch
YLR286C CTS1 2 540838 -0.0532308759628158 2.19 0 541139 0.139281338977401 4.30494541102317 unique_albert mch
YLR286C CTS1 10 652591 -0.0229336523335501 0.625 0 652591 -0.211501356515266 10.0568232346623 unique_albert mch
YLR286C CTS1 10 108143 0.0118673303929076 0.85 0 108259 -0.194100924467345 8.43922377031445 unique_albert mch
YLR286C CTS1 12 355836 0.0369664700777387 0.97 0 355836 0.121890387879065 3.28942593773757 unique_albert mch
YLR286C CTS1 14 333469 0.0602813556065329 3.35 0 333367 0.400897248475708 38.5027561807792 unique_albert mch
YLR286C CTS1 15 169704 0.0487974415177332 1.56 0 169704 -0.318037587805385 23.4337536455961 unique_albert mch
YJR048W CYC1 2 620700 -0.0677787741882717 3.1475 2 611232 0.127996257754158 3.63004017242166 oposite mch
YJR048W CYC1 11 253300 -0.0915119526408423 5.795 1 234378 -0.133183271454087 3.93291599061699 together mch
YJR048W CYC1 12 669250 -0.534789679144888 150.095 2 657022 -0.83278354177285 259.886560430043 together mch
YJR048W CYC1 13 59050 -0.101586074401499 6.9425 2 58688 0.0166506296424945 0 unique_brion mch
YJR048W CYC1 14 464050 0.273541975174427 38.7475 2 464117 -0.0809733779333494 0 unique_brion mch
YJR048W CYC1 15 151900 -0.06045977893382 3.24 1 156746 -0.203341984792277 9.2795342430973 together mch
YJR048W CYC1 4 228800 -0.0747539360866605 3.565 1 228893 -0.0483759917626263 0 unique_brion mch
YJR048W CYC1 13 363400 0.0628154165384753 3.665 1 338431 0.204906381686155 9.42598443154907 together mch
YJR048W CYC1 6 211826 -0.027962629796296 0.82 0 211652 -0.118832268671138 3.12527444634391 unique_albert mch
YJR048W CYC1 4 388440 -0.00804295207281607 0.885 0 388440 -0.1637658349691 5.97408375718002 unique_albert mch
YJR048W CYC1 12 136527 0.010938655530936 0.89 0 136527 -0.126323580876945 3.53502188068847 unique_albert mch
YJR048W CYC1 15 482608 -0.010901291274072 0.655 0 482608 -0.143449443205144 4.56919564537977 unique_albert mch
YJR048W CYC1 14 400976 0.205023788490794 21.635 0 400049 -0.288732606206845 19.1289673054713 unique_albert mch
YJR048W CYC1 7 140030 0.0024822533172431 0.4 0 140030 0.198630518490621 8.8458260480482 unique_albert mch
YJR048W CYC1 14 269607 0.0218665556898269 1.3 0 269607 0.187813460358765 7.89156078429819 unique_albert mch
YJR048W CYC1 8 153963 0.000567805899503138 0.445 0 154167 -0.138912879368461 4.28197557396391 unique_albert mch
YJR048W CYC1 10 649035 -0.0470132730380614 1.535 0 648461 0.159354455307822 5.65244962853039 unique_albert mch
YDL022W GPD1 2 585700 -0.0722792144192883 3.55 2 585769 0.00541768841886251 0 unique_brion mch
YDL022W GPD1 5 515216.666666667 -0.279484831690151 46.6136111111111 6 515950 -0.0117812145027447 0 unique_brion mch
YDL022W GPD1 8 109360 -0.0982448011774204 4.336 5 110970 -0.0191977180339406 0 unique_brion mch
YDL022W GPD1 12 692650 -0.160226912487039 15.3777777777778 6 662515 -0.244141275101225 13.5049736244408 together mch
YDL022W GPD1 13 36716.6666666667 -0.0829390900623336 3.91861111111111 6 36440 0.0697593089954343 0 unique_brion mch
YDL022W GPD1 14 472933.333333333 0.312338884480613 57.1702777777778 6 466588 -0.14633658550148 4.75699584585995 oposite mch
YDL022W GPD1 14 300017 0.0981819852763202 9.795 0 300017 0.189331688808882 8.02202919277623 unique_albert mch
YDL022W GPD1 16 291046 0.0234818949014228 0.958333333333333 0 291046 -0.121158177488317 3.24973188928171 unique_albert mch
YDL022W GPD1 15 140220 -0.0526699157687928 2.19333333333333 0 140220 -0.156424131471316 5.44390553970138 unique_albert mch
YDL022W GPD1 2 379311 -0.0354661139027543 1.43 0 379311 -0.131769091759461 3.84910577363757 unique_albert mch
YDL022W GPD1 15 524541 -0.032541653603667 1.84166666666667 0 524541 -0.171569559418689 6.56579142773173 unique_albert mch
YDL022W GPD1 4 229467 -0.050139095118569 2.26833333333333 0 229467 -0.135995174057867 4.10231673927787 unique_albert mch
YDL022W GPD1 12 136527 -0.00908159925105467 0.755 0 136527 -0.171644548979558 6.57161892932993 unique_albert mch
YDL022W GPD1 7 126466 0.00174082171133449 0.451666666666667 0 126593 0.24004539662353 13.0420313303422 unique_albert mch
YKR080W MTD1 2 570950 -0.130762441722662 8.5875 2 571034 0.0196817858318847 0 unique_brion mch
YKR080W MTD1 8 112800 -0.111805607881535 10.105 2 186657 -0.146760581063186 4.78490434704695 together mch
YKR080W MTD1 10 133300 0.154143739898669 11.5825 2 133354 -0.000778726401079727 0 unique_brion mch
YKR080W MTD1 14 466750 0.264791553782931 38.7325 2 442493 -0.325941508777873 24.6816930907272 oposite mch
YKR080W MTD1 12 693300 -0.073938972889194 3.445 1 693579 0.121145694077709 0 unique_brion mch
YKR080W MTD1 13 343663 0.0418990697907545 2.365 0 343663 -0.174189513070127 6.77099298205614 unique_albert mch
YKR080W MTD1 7 141946 -0.0187599943187952 0.55 0 141743 -0.141595990863339 4.45068884723278 unique_albert mch
YKR080W MTD1 3 130372 0.00551471409715132 0.455 0 130462 0.140535575532529 4.38360900265006 unique_albert mch
YKR080W MTD1 7 373713 0.048237890641006 1.655 0 374227 0.149321318691161 4.95525210407871 unique_albert mch
YKR080W MTD1 4 629042 -0.0182273403624208 1.215 0 628602 0.17790021357333 7.06728383094968 unique_albert mch
YKR080W MTD1 15 174019 0.0101700670063145 0.52 0 173814 0.22906559967264 11.8442008748291 unique_albert mch
YKR080W MTD1 12 136527 0.00818749739142919 0.44 0 137918 0.162291879957778 5.86558798559452 unique_albert mch
YKR080W MTD1 9 86586 0.00915097157546354 0.89 0 86720 -0.234859887572202 12.4685211132592 unique_albert mch
YFL039C NA 5 377600 0.101538274174973 8.48 1 378140 0.0196506685126092 0 unique_brion mch
YFL039C NA 7 113600 0.0775863080338052 5.13 1 226152 0.146802816726858 4.78768902605581 together mch
YFL039C NA 7 404000 0.0896930084990987 3.73 1 405432 0.0216705098423513 0 unique_brion mch
YFL039C NA 8 111300 0.184911311843876 14.32 1 115977 0.192339082495052 8.28380316986169 together mch
YFL039C NA 12 695000 -0.164468122717695 13.77 1 694915 0.0420208655840248 0 unique_brion mch
YFL039C NA 13 286700 0.154702078019759 11.4 1 286577 0.0881206459140589 0 unique_brion mch
YFL039C NA 14 531100 0.224232791715216 23.47 1 532649 0.0487172216772539 0 unique_brion mch
YFL039C NA 16 587900 0.0505184643617557 3.7 1 588991 -0.0270575564152334 0 unique_brion mch
YGL055W OLE1 11 442800 -0.0674490094099422 4.395 1 442829 0.0180057819332321 0 unique_brion mch
YGL055W OLE1 12 681850 -0.177587083427995 16.4 2 659769 -0.507038941316587 65.3058334063306 together mch
YGL055W OLE1 14 465450 0.205207101346794 25.3425 2 465187 -0.172262920477574 6.61977609020362 oposite mch
YGL055W OLE1 13 47300 -0.066674169395187 3.26 1 47637 0.00464709001283135 0 unique_brion mch
YGL055W OLE1 2 490264 -0.0296322292922318 0.745 0 490264 0.141444579173479 4.44107871736898 unique_albert mch
YGL055W OLE1 1 51951 -0.0389236468800212 1.31 0 52124 -0.28041646564226 17.997171423653 unique_albert mch
YGL055W OLE1 11 532175 -0.0506779228354766 1.575 0 531920 0.175343547167122 6.86242819592231 unique_albert mch
YGL055W OLE1 15 94227 0.00516990355040206 0.89 0 94056 -0.114041222369453 2.87672313749669 unique_albert mch
YGL055W OLE1 14 335872 0.075265334717938 6.33 0 335872 0.151886254321042 5.12896890351754 unique_albert mch
YGL055W OLE1 13 885661 0.0187365461372244 0.545 0 885661 0.134287616149272 3.99900874710021 unique_albert mch
YGL055W OLE1 9 386249 0.00713863921383147 0.465 0 386249 0.117488317133193 3.05449185177925 unique_albert mch
YOR293W RPS10A 2 609500 -0.10330676660772 6.09 1 609073 -0.0244963550744296 0 unique_brion mch
YOR293W RPS10A 4 90300 -0.10481669179115 6.56 1 90257 -0.0434649781951019 0 unique_brion mch
YOR293W RPS10A 4 926300 0.0499419276826134 3.33 1 926737 0.0138171995603738 0 unique_brion mch
YOR293W RPS10A 10 520700 0.0643065006409185 3.22 1 520808 0.00198880458868344 0 unique_brion mch
YOR293W RPS10A 11 213000 -0.0884232515945969 5.22 1 212874 0.00108630715436013 0 unique_brion mch
YOR293W RPS10A 13 262700 0.111326895159492 6.07 1 864754 -0.115333815638867 2.94274584553132 oposite mch
YOR293W RPS10A 14 471000 0.231123004481097 32.43 1 466588 0.195510880719402 8.56470387356612 together mch
YOR293W RPS10A 16 198900 0.0867473246873423 5.11 1 199138 0.0194086272820025 0 unique_brion mch
YOR293W RPS10A 14 370084 0.124924185517543 13.5 0 370084 -0.256537784140301 14.9601662061796 unique_albert mch
YOR293W RPS10A 4 592352 -0.0242158944404642 0.58 0 592352 -0.140697971058144 4.39384781037243 unique_albert mch
YOR293W RPS10A 12 660371 -0.0132532773858965 0.65 0 660371 0.198182508455649 8.80515829528245 unique_albert mch
YOR293W RPS10A 15 139908 0.0344446724763011 1.68 0 139908 0.152932568193597 5.20072285061342 unique_albert mch
YOR293W RPS10A 7 180027 -0.0243651385904237 1.18 0 180027 -0.141668562819448 4.45529879784718 unique_albert mch
YGR192C TDH3 1 196600 -0.0994336166729458 3.25 1 196932 0.018382439804923 0 unique_brion mch
YGR192C TDH3 2 574600 -0.0514003160235188 5.14 1 573799 -0.0154754590942072 0 unique_brion mch
YGR192C TDH3 5 407400 0.190191009832563 15.36 1 407785 -0.0581747974377766 0 unique_brion mch
YGR192C TDH3 8 99700 -0.0878141883798798 4.52 1 100079 -0.0638758520725998 0 unique_brion mch
YGR192C TDH3 10 152000 0.205733752849037 21.74 1 152412 0.0270844670438895 0 unique_brion mch
YGR192C TDH3 11 180200 -0.0641089792344378 4.01 1 180597 0.0131292443139054 0 unique_brion mch
YGR192C TDH3 14 149000 -0.0705474100359267 3.44 1 148331 -0.00735548648531342 0 unique_brion mch
YGR192C TDH3 14 481600 0.203094419770534 23.6 1 464117 0.44134550532744 47.6088339329781 together mch
YGR192C TDH3 13 232771 0.0424882765061035 0.51 0 232771 -0.124454617372544 3.43037935092614 unique_albert mch
YGR192C TDH3 15 1026427 -0.00324908710461054 0.59 0 1026427 -0.121342177998092 3.25968361648594 unique_albert mch
YGR192C TDH3 12 671257 -0.0400518122056127 0.67 0 671257 0.203903901346569 9.3319973735639 unique_albert mch
YGR192C TDH3 14 259493 -0.019950371979771 0.51 0 259694 0.124169140555567 3.41453727640274 unique_albert mch
YLL028W TPO1 11 308500 -0.0581605394577704 4.0875 2 308425 -0.00742269576611259 0 unique_brion mch
YLL028W TPO1 12 677200 -0.134170507903013 12.7675 2 642132 -0.190790798819564 8.1484810426439 together mch
YLL028W TPO1 13 63400 -0.114001261797591 7.6425 2 62570 0.0492807623519108 0 unique_brion mch
YLL028W TPO1 14 469400 0.245896914972749 32.6775 2 469224 -0.0228716344986709 0 unique_brion mch
YLL028W TPO1 15 144550 -0.155906879855757 17.3475 2 151910 -0.704456299743044 150.682965852067 together mch
YLL028W TPO1 2 626000 -0.0763648118872198 4.4 1 617783 0.181582380312848 7.36787769097371 oposite mch
YLL028W TPO1 4 131512 -0.0217561240424216 1.045 0 131600 0.124935307714713 3.45713928120921 unique_albert mch
YLL028W TPO1 16 138394 0.0159770376154513 0.58 0 138394 0.128625564402111 3.66612298471197 unique_albert mch
YLL028W TPO1 14 394076 0.156649053910565 15.015 0 394076 -0.143546399277065 4.5754390523662 unique_albert mch
YLL028W TPO1 15 604757 -0.0191834561783824 0.785 0 604413 0.170573353660255 6.48863163542591 unique_albert mch
YLL028W TPO1 10 156976 0.0141735178815181 0.585 0 156976 0.126302116567444 3.53381096393375 unique_albert mch
YLL028W TPO1 13 776467 0.0184098494419201 0.465 0 776467 0.15888755258156 5.6189487274252 unique_albert mch
YKL035W UGP1 4 1071200 -0.205549735930151 26.0544444444444 3 1071689 -0.0765981418294726 0 unique_brion mch
YKL035W UGP1 10 130133.333333333 0.118297369655377 5.21555555555556 3 129912 0.0358647646051851 0 unique_brion mch
YKL035W UGP1 13 52033.3333333333 -0.102693775501125 6.01222222222222 3 52335 0.00802146846701481 0 unique_brion mch
YKL035W UGP1 14 483333.333333333 0.24409344952275 29.3288888888889 3 481896 0.0653627046411663 0 unique_brion mch
YKL035W UGP1 7 131125 -0.0209381266533995 0.576666666666667 0 130869 0.171634090888114 6.57080606020184 unique_albert mch
YKL035W UGP1 14 300017 0.0479326478262773 3.32333333333333 0 300017 0.258582280909966 15.2080454636757 unique_albert mch
YKL035W UGP1 15 512726 0.0506588561634066 1.9 0 513015 -0.131126590845046 3.81133449936319 unique_albert mch
YKL035W UGP1 14 376313 0.115605979915972 9.09 0 376313 0.140559837917294 4.38513792997685 unique_albert mch
YKL035W UGP1 15 139908 -0.057956459362295 3.03333333333333 0 139908 -0.247027254409641 13.8364676969185 unique_albert mch
YKL035W UGP1 8 110970 -0.0659380693046077 1.66 0 110970 0.115063782846315 2.92889005543531 unique_albert mch
YKL035W UGP1 12 136527 -0.00726829983383199 0.79 0 136527 -0.229825798702493 11.9251215553989 unique_albert mch
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