Revision 75b3d2797c134b08cdfd98c69ccc55aef7ef411f authored by Konrad Werys on 06 March 2019, 16:39:48 UTC, committed by Konrad Werys on 06 March 2019, 16:39:48 UTC
1 parent da98c00
OxOriginalShmolliDicomReader.h
/*!
* \file OxOriginalShmolliDicomReader.h
* \author Konrad Werys
* \date 2018/08/24
*/
#ifndef Tomato_OxOriginalShmolliDicomReader_H
#define Tomato_OxOriginalShmolliDicomReader_H
#include "CmakeConfigForTomato.h"
#ifdef USE_ITK
#include "itkReadFileListFilter.h"
#include "itkSortInvTimesImageFilter.h"
#include "itkExtractImageFilter.h"
#ifdef USE_VTK
#include "QuickView.h"
#endif //USE_VTK
namespace Ox {
/**
* \class OxOriginalShmolliDicomReader
* includes factories and methods needed for calculation
*/
template< typename MeasureType >
class OriginalShmolliDicomReader {
public:
// typedefs primitive data types
typedef MeasureType InputPixelType;
typedef MeasureType OutputPixelType;
// typedefs image data types
typedef itk::Image<InputPixelType, 3> Image3dType;
typedef itk::Image<OutputPixelType, 2> Image2dType;
typedef itk::ReadFileListFilter<Image3dType> ReadFileListFilterType;
typedef itk::SortInvTimesImageFilter<Image3dType, Image3dType> SortInvTimesImageFilterType;
// member variables
bool _visualise;
InputPixelType *_invTimes;
InputPixelType *_echoTimes;
int _nSamples;
typename Image3dType::Pointer _imageMag;
typename Image3dType::Pointer _imagePha;
typename Image2dType::Pointer _imageT1grey;
typename Image2dType::Pointer _imageT1color;
typename Image2dType::Pointer _imageR2;
typename Image2dType::Pointer _imageA;
typename Image2dType::Pointer _imageB;
typename Image2dType::Pointer _imageT1star;
typename Image2dType::Pointer _imageNShmolliSamplesUsed;
typename Image2dType::Pointer _imageChiSqrt;
typename Image2dType::Pointer _imageSnr;
std::vector<std::string> _filesMag;
std::vector<std::string> _filesPha;
std::vector<std::string> _filesT1;
std::vector<std::string> _filesFitparams;
/**
* readAndSort
* @return success/failure
*/
int readAndSort();
/**
* visualise
* @return success/failure
*/
int visualise();
int copyFromImage(MeasureType* array, const typename Image3dType::Pointer image, const typename Image3dType::IndexType index);
/**
* constructor
* @param inputFileNam
*/
OriginalShmolliDicomReader(){
_visualise = false;
_invTimes = 0;
_echoTimes = 0;
_nSamples = 0;
_imageMag = 0;
_imagePha = 0;
_imageT1grey = 0;
_imageT1color = 0;
_imageA = 0;
_imageB = 0;
_imageT1star = 0;
_imageNShmolliSamplesUsed = 0;
_imageChiSqrt = 0;
_imageSnr = 0;
};
/**
* \brief do not forget about the virtual destructor, see
* https://stackoverflow.com/questions/461203/when-to-use-virtual-destructors
*/
virtual ~OriginalShmolliDicomReader(){};
};
} // namespace Ox
#include "OxOriginalShmolliDicomReader.hxx"
#endif
#endif //Tomato_OxOriginalShmolliDicomReader_H
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