Revision 782a296d16f1153701ebd2eb0c9e324eba5bf1e2 authored by tboury on 06 May 2023, 11:36:12 UTC, committed by tboury on 06 May 2023, 11:36:12 UTC
1 parent 67d94ba
Makefile
dependencies:
conda install -y -c conda-forge -c bioconda 'infrared' viennarna jupyter matplotlib pip networkx graphviz pygraphviz
pip install varnaapi
pip install func_timeout
tests:
python3 Launcher.py --task create_patterns_and_targets
python Launcher.py --task launch_sanity_test
tests_no_varna:
python3 Launcher.py --task create_patterns_and_targets
python Launcher.py --task launch_sanity_test_novarna
clean:
rm -f *.png
rm -R -f __pycache__
rm -f *.pdf
rm -f carte1.csv
rm -f eRMSD_distribution.csv
rm temp_kink_pdb.txt
clean_all:
rm -f *.png
rm -R -f __pycache__
rm -f *.pdf
rm -f carte1.csv
rm -f eRMSD_distribution.csv
rm -r ALLkinkturnpattern
rm -r ALLkinkturntarget
rm -r ALLkinkturnpatternwithgaps
rm -r ALLkinkturntargetwithgaps
rm temp_kink_pdb.txt
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