Revision 7986534c35b4782cacf71d881df485c999eaf596 authored by Matt Bull on 01 April 2020, 08:24:01 UTC, committed by Matt Bull on 01 April 2020, 08:24:01 UTC
1 parent 819c86a
Singularity.artic-ncov2019-medaka
Bootstrap: docker
From: continuumio/miniconda3:latest
%files
environment-medaka.yml /environment.yml
%labels
authors="Matt Bull"
description="Docker image containing all requirements for the ARTIC project's ncov2019 pipeline"
%post
apt-get update && apt-get install -y g++ git make procps rsync && apt-get clean -y
/opt/conda/bin/conda env create -f /environment.yml && /opt/conda/bin/conda clean -a
PATH=/opt/conda/envs/fieldbioinformatics-medaka/bin:$PATH
%environment
export PATH=/opt/conda/envs/fieldbioinformatics-medaka/bin:$PATH
%runscript
exec "/opt/conda/envs/fieldbioinformatics-medaka/bin/artic" "$@"
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