7b92fe7 | Mikhail Kolmogorov | 08 December 2020, 17:38:21 UTC | Merge pull request #70 from ddeka2910/master Add architecture ppc64le to travis build | 08 December 2020, 17:38:21 UTC |
686db1b | Debabrata Deka | 02 December 2020, 10:17:21 UTC | Add architecture ppc64le to travis build | 02 December 2020, 10:17:21 UTC |
031e062 | Mikhail Kolmogorov | 25 October 2020, 02:46:53 UTC | Update README.md | 25 October 2020, 02:46:53 UTC |
fe151c7 | Mikhail Kolmogorov | 25 October 2020, 02:46:08 UTC | Update README.md | 25 October 2020, 02:46:08 UTC |
06d695b | Mikhail Kolmogorov | 16 July 2020, 22:24:03 UTC | Merge pull request #66 from pmoulos/networkx_prop_fix Proposed fix for networkx removed function | 16 July 2020, 22:24:03 UTC |
44b343a | Mikhail Kolmogorov | 09 July 2020, 19:40:30 UTC | Merge pull request #65 from bernard-kim/master dtype conversion in hal.py | 09 July 2020, 19:40:30 UTC |
cc51eb6 | Panagiotis Moulos | 09 July 2020, 14:50:07 UTC | Proposed fix for networkx removed function | 09 July 2020, 14:50:07 UTC |
36dda07 | Bernard Kim | 02 July 2020, 05:39:54 UTC | dtype conversion in hal.py | 02 July 2020, 05:39:54 UTC |
5ad9ea6 | Mikhail Kolmogorov | 31 March 2020, 01:02:32 UTC | Update USAGE.md | 31 March 2020, 01:02:32 UTC |
00f6819 | Mikhail Kolmogorov | 31 March 2020, 01:01:51 UTC | mention maf in the docs | 31 March 2020, 01:01:51 UTC |
f1e7a74 | Mikhail Kolmogorov | 17 March 2020, 21:36:20 UTC | forgot to update setup.py | 17 March 2020, 21:36:20 UTC |
9f93661 | Mikhail Kolmogorov | 17 March 2020, 21:06:11 UTC | toy test added | 17 March 2020, 21:06:11 UTC |
f0fa36f | Mikhail Kolmogorov | 17 March 2020, 20:50:09 UTC | docs update | 17 March 2020, 20:50:09 UTC |
784c288 | Mikhail Kolmogorov | 17 March 2020, 19:39:02 UTC | setuptools instead of distutils | 17 March 2020, 19:39:02 UTC |
42fa405 | Mikhail Kolmogorov | 17 March 2020, 02:37:39 UTC | disable python version check in setup.py | 17 March 2020, 02:37:39 UTC |
ef228bf | Mikhail Kolmogorov | 17 March 2020, 00:49:47 UTC | newick parser fix | 17 March 2020, 00:49:47 UTC |
a6524a8 | Mikhail Kolmogorov | 16 March 2020, 23:43:03 UTC | fixed bug with missing link | 16 March 2020, 23:43:03 UTC |
6650d29 | Mikhail Kolmogorov | 16 March 2020, 23:39:05 UTC | travis v4 | 16 March 2020, 23:39:05 UTC |
e3d1d9a | Mikhail Kolmogorov | 16 March 2020, 23:37:02 UTC | travis v3 | 16 March 2020, 23:37:02 UTC |
17b21d5 | Mikhail Kolmogorov | 16 March 2020, 23:34:33 UTC | travis v2 | 16 March 2020, 23:34:33 UTC |
f798099 | Mikhail Kolmogorov | 16 March 2020, 23:28:20 UTC | travis fix | 16 March 2020, 23:28:20 UTC |
c9a4cfa | Mikhail Kolmogorov | 16 March 2020, 23:11:56 UTC | fixed hardcoded py2 in tests | 16 March 2020, 23:11:56 UTC |
26e9238 | Mikhail Kolmogorov | 16 March 2020, 23:06:20 UTC | six.py integrated | 16 March 2020, 23:06:20 UTC |
0720832 | Mikhail Kolmogorov | 16 March 2020, 22:50:30 UTC | travis py2 and py3 | 16 March 2020, 22:50:30 UTC |
4e60683 | Mikhail Kolmogorov | 16 March 2020, 22:47:15 UTC | modernize scripts | 16 March 2020, 22:47:15 UTC |
642d551 | Mikhail Kolmogorov | 16 March 2020, 22:43:40 UTC | script warnings fixed | 16 March 2020, 22:43:40 UTC |
f2ac2d0 | Mikhail Kolmogorov | 14 March 2020, 00:53:18 UTC | update gaps in the very end | 14 March 2020, 00:53:18 UTC |
b8c81f9 | Mikhail Kolmogorov | 14 March 2020, 00:38:41 UTC | allow Py3 | 14 March 2020, 00:38:41 UTC |
c838c36 | Mikhail Kolmogorov | 14 March 2020, 00:37:29 UTC | fixed a couple of bugs with contig links representation | 14 March 2020, 00:37:29 UTC |
5aedea7 | Mikhail Kolmogorov | 14 March 2020, 00:15:24 UTC | assembly refine determinism | 14 March 2020, 00:15:24 UTC |
69a94a8 | Mikhail Kolmogorov | 12 March 2020, 02:06:42 UTC | well, this is weird, but looks like networkx might change the objects | 12 March 2020, 02:06:42 UTC |
23c7ddb | Mikhail Kolmogorov | 12 March 2020, 02:05:42 UTC | works for Py3 | 12 March 2020, 02:05:42 UTC |
51d7520 | Mikhail Kolmogorov | 11 March 2020, 23:22:34 UTC | deterministic tree | 11 March 2020, 23:22:34 UTC |
9e97483 | Mikhail Kolmogorov | 11 March 2020, 00:54:38 UTC | most warnings fixed | 11 March 2020, 00:54:38 UTC |
c826a1a | Mikhail Kolmogorov | 10 March 2020, 23:14:50 UTC | more warnings fixed | 10 March 2020, 23:14:50 UTC |
a578afd | Mikhail Kolmogorov | 10 March 2020, 22:55:49 UTC | towards py3: fixing pylint warnings | 10 March 2020, 22:55:49 UTC |
82763de | Mikhail Kolmogorov | 19 January 2020, 20:37:07 UTC | Merge pull request #55 from enormandeau/patch-1 explicitely require bioconda channel for conda | 19 January 2020, 20:37:07 UTC |
2f299d6 | Eric Normandeau | 17 January 2020, 20:12:14 UTC | Update INSTALL.md | 17 January 2020, 20:12:14 UTC |
bd2fba7 | Mikhail Kolmogorov | 19 August 2019, 19:26:42 UTC | specifying networkx version 2.2 | 19 August 2019, 19:26:42 UTC |
2d93fe7 | Mikhail Kolmogorov | 08 April 2019, 22:51:35 UTC | Update README.md | 08 April 2019, 22:51:35 UTC |
ec749b9 | Mikhail Kolmogorov | 08 April 2019, 22:38:40 UTC | deleted old unneeded scripts, fix #37 and #36 | 08 April 2019, 22:38:40 UTC |
5159e50 | Mikhail Kolmogorov | 08 April 2019, 22:34:47 UTC | fix #38 | 08 April 2019, 22:34:47 UTC |
54a864f | Mikhail Kolmogorov | 08 April 2019, 22:12:04 UTC | remove debug print | 08 April 2019, 22:12:04 UTC |
a9d35f7 | Mikhail Kolmogorov | 08 April 2019, 21:24:40 UTC | setup file update | 08 April 2019, 21:24:40 UTC |
3b50427 | Mikhail Kolmogorov | 08 April 2019, 21:15:29 UTC | 2.2 | 08 April 2019, 21:15:29 UTC |
5292c29 | Mikhail Kolmogorov | 08 April 2019, 21:14:14 UTC | Newick module moved to ragout root, installation instructions update | 08 April 2019, 21:14:14 UTC |
d30f5ce | Mikhail Kolmogorov | 08 April 2019, 19:55:07 UTC | Merge pull request #41 from latticetower/master Make everything work with networkx >= 2.2. | 08 April 2019, 19:55:07 UTC |
b32c173 | Tatiana Malygina | 26 March 2019, 15:23:10 UTC | fix another permission error during travis-ci run | 26 March 2019, 15:23:10 UTC |
c3bc4cc | Tatiana Malygina | 26 March 2019, 14:51:44 UTC | fix permission error during travis-ci run | 26 March 2019, 14:51:44 UTC |
9e0e4e5 | Tatiana Malygina | 26 March 2019, 14:46:01 UTC | add networkx dependency to travis-ci script | 26 March 2019, 14:46:01 UTC |
ae9e1d1 | Tatiana Malygina | 26 March 2019, 14:26:56 UTC | remove redundant round brackets: edges() -> edges, nodes() -> nodes | 26 March 2019, 14:26:56 UTC |
f4d4e22 | Tatiana Malygina | 25 March 2019, 14:08:08 UTC | fix AttributeError: 'set' object has no attribute 'items' | 25 March 2019, 14:08:08 UTC |
e3a06ef | Tatiana Malygina | 25 March 2019, 13:19:40 UTC | fix TypeError: object of type 'dictionary-keyiterator' has no len() | 25 March 2019, 13:32:22 UTC |
d49a5c4 | Tatiana Malygina | 25 March 2019, 13:09:21 UTC | replace edges_iter iterator with edges iterator in networkx graphs | 25 March 2019, 13:09:30 UTC |
f865c3e | Tatiana Malygina | 25 March 2019, 13:04:12 UTC | remove networkx from lib dir | 25 March 2019, 13:04:12 UTC |
758500e | Mikhail Kolmogorov | 17 March 2019, 01:49:37 UTC | Merge branch 'devel' | 17 March 2019, 01:49:37 UTC |
1637fbf | Mikhail Kolmogorov | 16 March 2019, 00:05:00 UTC | Merge branch 'master' into devel | 16 March 2019, 00:05:00 UTC |
fbffe40 | Mikhail Kolmogorov | 16 March 2019, 00:04:27 UTC | gff parser for maf2synteny | 16 March 2019, 00:04:27 UTC |
c21e237 | Mikhail Kolmogorov | 31 October 2018, 01:34:43 UTC | Citations update | 31 October 2018, 01:34:43 UTC |
9b706fa | Mikhail Kolmogorov | 30 July 2018, 20:00:30 UTC | version update | 30 July 2018, 20:00:30 UTC |
2b3e6d5 | Mikhail Kolmogorov | 28 July 2018, 00:03:15 UTC | installation script + repository reorganisation | 28 July 2018, 00:03:15 UTC |
a68b9db | Mikhail Kolmogorov | 27 July 2018, 01:48:58 UTC | bioconda badge | 27 July 2018, 01:48:58 UTC |
51ecff3 | Mikhail Kolmogorov | 27 July 2018, 01:39:47 UTC | docs update 2 | 27 July 2018, 01:39:47 UTC |
2300e45 | Mikhail Kolmogorov | 27 July 2018, 00:03:16 UTC | docs update | 27 July 2018, 00:03:16 UTC |
67a513a | Mikhail Kolmogorov | 26 July 2018, 23:06:30 UTC | a fix for sorting leaves by distance function | 26 July 2018, 23:06:30 UTC |
da193f0 | Mikhail Kolmogorov | 26 July 2018, 20:31:49 UTC | updated newick packages source, now consistent with Bioconda version | 26 July 2018, 20:31:49 UTC |
119e6dc | Mikhail Kolmogorov | 18 July 2018, 20:14:16 UTC | some auxialary scipts changes | 18 July 2018, 20:14:16 UTC |
2c85472 | Mikhail Kolmogorov | 18 July 2018, 20:12:54 UTC | non-recursive dfs implementation + some logging improvements | 18 July 2018, 20:12:54 UTC |
626d759 | Mikhail Kolmogorov | 09 July 2018, 19:18:39 UTC | some changes | 09 July 2018, 19:18:39 UTC |
0cb7679 | Mikhail Kolmogorov | 08 July 2018, 04:15:09 UTC | custom block sizes | 08 July 2018, 04:15:09 UTC |
f453881 | Mikhail Kolmogorov | 06 July 2018, 02:36:51 UTC | minimap verification script | 06 July 2018, 02:36:51 UTC |
71562fc | Mikhail Kolmogorov | 20 December 2016, 19:41:37 UTC | a fix for empty parent scaffold during merging | 20 December 2016, 19:41:37 UTC |
0543d6d | Mikhail Kolmogorov | 20 December 2016, 19:41:06 UTC | more informative message for empty permutation file | 20 December 2016, 19:41:06 UTC |
78e959d | Mikhail Kolmogorov | 03 December 2016, 01:15:25 UTC | a fix for genomes with dots | 03 December 2016, 01:15:25 UTC |
70de692 | Mikhail Kolmogorov | 28 November 2016, 21:11:23 UTC | centered logo | 28 November 2016, 21:11:23 UTC |
766b2ec | Mikhail Kolmogorov | 28 November 2016, 21:07:05 UTC | figure fix | 28 November 2016, 21:07:05 UTC |
8322e1d | Mikhail Kolmogorov | 28 November 2016, 21:05:37 UTC | logo | 28 November 2016, 21:05:37 UTC |
a603106 | Mikhail Kolmogorov | 28 November 2016, 20:39:26 UTC | typo | 28 November 2016, 20:39:26 UTC |
c9b5d38 | Mikhail Kolmogorov | 28 November 2016, 20:31:55 UTC | minor docs update | 28 November 2016, 20:31:55 UTC |
6eed507 | Mikhail Kolmogorov | 28 November 2016, 20:22:31 UTC | news | 28 November 2016, 20:22:31 UTC |
a75e60e | Mikhail Kolmogorov | 28 November 2016, 20:19:24 UTC | typo | 28 November 2016, 20:19:24 UTC |
26d4aac | Mikhail Kolmogorov | 28 November 2016, 20:18:42 UTC | refinement disabled by default | 28 November 2016, 20:18:42 UTC |
4559980 | Mikhail Kolmogorov | 28 November 2016, 20:05:29 UTC | documentation update | 28 November 2016, 20:05:29 UTC |
a7b6644 | Mikhail Kolmogorov | 14 November 2016, 19:10:13 UTC | error if no unique synteny blocks | 14 November 2016, 19:10:13 UTC |
83789c3 | Mikhail Kolmogorov | 09 November 2016, 23:35:46 UTC | Merge branch 'master' into devel | 09 November 2016, 23:35:46 UTC |
7ec4e12 | Mikhail Kolmogorov | 09 November 2016, 23:35:13 UTC | counting target-specific breakpoints, --inMemory option for hal removed | 09 November 2016, 23:35:13 UTC |
ebd9205 | Mikhail Kolmogorov | 07 November 2016, 01:04:53 UTC | Update README.md | 07 November 2016, 01:04:53 UTC |
83f232f | Mikhail Kolmogorov | 19 August 2016, 23:50:55 UTC | Merge branch 'master' into devel | 19 August 2016, 23:50:55 UTC |
4bfbda6 | Max Shen | 19 August 2016, 19:44:37 UTC | fix negative gaps after assebly refinement | 19 August 2016, 19:44:37 UTC |
343c077 | Mikhail Kolmogorov | 09 August 2016, 01:25:37 UTC | oups | 09 August 2016, 01:25:37 UTC |
4674e03 | Mikhail Kolmogorov | 09 August 2016, 01:14:00 UTC | some refactoring and logging improvement | 09 August 2016, 01:14:00 UTC |
27e6ef3 | Mikhail Kolmogorov | 17 February 2016, 20:49:21 UTC | readme | 17 February 2016, 20:49:21 UTC |
3bbd6c9 | Mikhail Kolmogorov | 17 February 2016, 20:30:17 UTC | an option to disable chimera detection module + sorting output fasta | 17 February 2016, 20:30:17 UTC |
b3bf289 | Mikhail Kolmogorov | 17 February 2016, 19:29:27 UTC | Merge branch 'master' into devel | 17 February 2016, 19:29:27 UTC |
024d279 | Mikhail Kolmogorov | 23 January 2016, 02:49:25 UTC | tests fixed | 23 January 2016, 02:49:25 UTC |
8283a58 | Mikhail Kolmogorov | 23 January 2016, 02:13:28 UTC | small improvement | 23 January 2016, 02:13:28 UTC |
73def46 | Mikhail Kolmogorov | 23 January 2016, 02:11:45 UTC | a small fix in verify-order | 23 January 2016, 02:11:45 UTC |
b4ec394 | Mikhail Kolmogorov | 19 January 2016, 02:30:05 UTC | test fix | 19 January 2016, 02:30:05 UTC |
f2e21cd | Mikhail Kolmogorov | 19 January 2016, 02:23:37 UTC | a small fix for verification script | 19 January 2016, 02:23:37 UTC |
e1cc723 | Mikhail Kolmogorov | 18 November 2015, 03:26:21 UTC | maf2synteny update | 18 November 2015, 03:26:21 UTC |