Revision 7c5aa29ff557bd8955eafb0a5699960a79aee4f7 authored by schuettepeter on 19 November 2020, 16:48:10 UTC, committed by GitHub on 19 November 2020, 16:48:10 UTC
1 parent b1c1521
rename_cellRegistered.py
from helpers import *
import hdf5storage
mousenums = getmousenums('../')
os.chdir('../')
for mouse in mousenums:
os.chdir(mouse)
for filename in os.listdir():
if filename.find('cellRegistered') > -1:
CR = hdf5storage.loadmat(filename)['cell_registered_struct']['cell_to_index_map'][0].astype('int')
#ind = np.arange(CR.shape[1])
#ind[1] = 0
#ind[0] = 1
#
#if CR.shape[1] == 7:
# CR = CR[:, [1, 0, 2, 3, 4, 5, 6]]
#elif CR.shape[1] == 6:
# CR = CR[:, [1, 0, 2, 3, 4, 5]]
crdict = {'CR': CR}
print(mouse)
sio.savemat('coreg.mat', crdict)
os.chdir('../')
Computing file changes ...
