| 7e3a60e | Diego Vidaurre | 20 August 2022, 08:47:06 UTC | Cosmetic changes | 20 August 2022, 08:47:06 UTC |
| bc8458d | Diego Vidaurre | 16 August 2022, 14:20:36 UTC | Cleaned options of stochastic inference | 16 August 2022, 14:20:36 UTC |
| cae1491 | Diego Vidaurre | 15 August 2022, 21:25:45 UTC | Update README.md | 15 August 2022, 21:25:45 UTC |
| 4c1d328 | Diego Vidaurre | 15 August 2022, 21:24:44 UTC | Merge branch 'master' of https://github.com/OHBA-analysis/HMM-MAR | 15 August 2022, 21:24:44 UTC |
| f5322e3 | Diego Vidaurre | 15 August 2022, 21:23:54 UTC | Important commit correcting a bad bug in the stochastic inference (introduced some months ago) | 15 August 2022, 21:23:54 UTC |
| 409fac5 | evanr70 | 27 July 2022, 12:33:02 UTC | getStateLifeTimes bug fix Introduction of `if options.dropstates==1` in `getStateLifeTimes.m` lead to errors in `read_spm_file`. The latter passes an empty struct to the former. As no default is provided for `options.dropstates`, matlab throws an error. This is now fixed by providing the default `options.dropstates=0`. | 27 July 2022, 12:33:02 UTC |
| b1feb00 | Diego Vidaurre | 02 July 2022, 16:46:57 UTC | Merge branch 'master' of https://github.com/OHBA-analysis/HMM-MAR | 02 July 2022, 16:46:57 UTC |
| 51752e8 | Diego Vidaurre | 02 July 2022, 16:40:38 UTC | Fixed small error in the standardization when using TDE on one signal | 02 July 2022, 16:40:38 UTC |
| 6595b90 | Diego Vidaurre | 12 June 2022, 21:07:54 UTC | Merge pull request #80 from Wetiqe/master Get chronectome info for all states when using vpath | 12 June 2022, 21:07:54 UTC |
| 18ed678 | Wetiqe | 12 June 2022, 19:27:49 UTC | Get chronectome info for all states using vpath In rare cases, especially when K is large and using fMRI data, the unique value in vpath is lesser than K. Though the code can run but the results do not have labels. It's not very intuitive to determine the corresponding state of the results. | 12 June 2022, 19:27:49 UTC |
| 3adb0db | Cam Higgins | 31 May 2022, 09:02:19 UTC | Added Poisson code for when hmmdecode is called | 31 May 2022, 09:02:19 UTC |
| d9a0e41 | Cam Higgins | 23 May 2022, 11:24:27 UTC | Updated STRM examples | 23 May 2022, 11:24:27 UTC |
| 01740cc | Cam Higgins | 03 May 2022, 00:00:37 UTC | Fixed a bug in logistic regression inderence | 03 May 2022, 00:00:37 UTC |
| ef58eda | Cam Higgins | 02 May 2022, 23:13:50 UTC | Some bug fixes for logistic regression model | 02 May 2022, 23:13:50 UTC |
| f43c42e | Cam Higgins | 29 April 2022, 04:07:32 UTC | trivial formatting changes | 29 April 2022, 04:07:32 UTC |
| f15be0b | Cam Higgins | 29 April 2022, 03:55:15 UTC | Some trivial formatting changes | 29 April 2022, 03:55:15 UTC |
| 9c95c89 | Cam Higgins | 28 April 2022, 07:07:57 UTC | Added code for Poisson and Bernoulli observation models | 28 April 2022, 07:07:57 UTC |
| ee4fd49 | Cam Higgins | 28 April 2022, 00:57:49 UTC | Minor updates to variable names for STRM example | 28 April 2022, 00:57:49 UTC |
| bb19f71 | Diego Vidaurre | 25 April 2022, 08:06:13 UTC | Corrected typo in documentation of hmmtest.m | 25 April 2022, 08:06:13 UTC |
| 8d2ea22 | Diego Vidaurre | 28 March 2022, 08:38:46 UTC | Corrected an error in hmmtest.m | 28 March 2022, 08:38:46 UTC |
| 9fb64cc | Diego Vidaurre | 28 March 2022, 08:21:39 UTC | tweak in last commit | 28 March 2022, 08:21:39 UTC |
| 993fcd2 | Diego Vidaurre | 28 March 2022, 08:16:11 UTC | Added warning in specttest to warn of sufficient number of permutations | 28 March 2022, 08:16:11 UTC |
| fff8691 | Diego Vidaurre | 27 March 2022, 08:35:53 UTC | Added a function to prune unused states after the inference (hmmprune) | 27 March 2022, 08:35:53 UTC |
| 264f82f | Diego Vidaurre | 13 March 2022, 22:47:37 UTC | Technical updates in new model 6 | 13 March 2022, 22:47:37 UTC |
| 9041ad4 | Diego Vidaurre | 07 March 2022, 16:24:08 UTC | Technical updates in new model 5 | 07 March 2022, 16:24:08 UTC |
| f7dc445 | Diego Vidaurre | 07 March 2022, 16:20:32 UTC | fixed a bug in the stochastic inference | 07 March 2022, 16:20:32 UTC |
| db67b35 | Diego Vidaurre | 24 February 2022, 20:42:44 UTC | Technical updates in new model 4 | 24 February 2022, 20:42:44 UTC |
| 5303b22 | Diego Vidaurre | 24 February 2022, 11:10:51 UTC | Technical updates in new model 3 | 24 February 2022, 11:10:51 UTC |
| e3694be | Diego Vidaurre | 16 February 2022, 14:20:23 UTC | Technical updates in new model 2 | 16 February 2022, 14:20:23 UTC |
| fed5528 | Diego Vidaurre | 16 February 2022, 08:57:53 UTC | Technical updates in new model #1 | 16 February 2022, 08:57:53 UTC |
| 97bb61e | Diego Vidaurre | 14 February 2022, 21:12:59 UTC | More changes to new model | 14 February 2022, 21:12:59 UTC |
| 8dc81db | Diego Vidaurre | 13 February 2022, 18:52:14 UTC | more changes on new model | 13 February 2022, 18:52:14 UTC |
| a218c82 | Diego Vidaurre | 09 February 2022, 10:49:18 UTC | Major changes in the new model, episodic HMM (including change of name) | 09 February 2022, 10:49:18 UTC |
| b1e49e4 | Diego Vidaurre | 31 January 2022, 15:49:26 UTC | New initialisation strategy for MAR models based on windowing | 31 January 2022, 15:49:26 UTC |
| d9e3631 | Diego Vidaurre | 27 January 2022, 11:04:52 UTC | Changes related to new model, and some tweaks in TUDA | 27 January 2022, 11:04:52 UTC |
| 9ee96b5 | Diego Vidaurre | 27 January 2022, 10:58:22 UTC | Added HMM-PCA to test script, additional checks in options, and some housecleaning | 27 January 2022, 10:58:22 UTC |
| dc4d55b | Diego Vidaurre | 27 January 2022, 10:42:29 UTC | Merge branch 'master' of https://github.com/OHBA-analysis/HMM-MAR | 27 January 2022, 10:42:29 UTC |
| 0263069 | Diego Vidaurre | 27 January 2022, 10:41:47 UTC | Small error in the test script for spectral calculations | 27 January 2022, 10:41:47 UTC |
| f703df8 | Diego Vidaurre | 27 January 2022, 10:36:00 UTC | Merge pull request #54 from nikosavola/33-testing-ci Testing in CI | 27 January 2022, 10:36:00 UTC |
| ba00bc1 | Diego Vidaurre | 27 January 2022, 08:46:44 UTC | Merge branch 'master' of https://github.com/OHBA-analysis/HMM-MAR | 27 January 2022, 08:46:44 UTC |
| 4cc9b36 | Diego Vidaurre | 27 January 2022, 08:46:15 UTC | small change to merge obslike.m | 27 January 2022, 08:46:15 UTC |
| 1d77074 | Diego Vidaurre | 27 January 2022, 08:39:20 UTC | Delete hsinference.asv | 27 January 2022, 08:39:20 UTC |
| 182a1e6 | Cam Higgins | 17 December 2021, 09:24:48 UTC | Minor edits on STRM example | 17 December 2021, 09:24:48 UTC |
| 81800ff | Cam Higgins | 16 December 2021, 19:55:23 UTC | STRM example updates | 16 December 2021, 19:55:23 UTC |
| c5fcfc8 | Cam Higgins | 16 December 2021, 18:57:04 UTC | Merge branch 'master' of github.com:OHBA-analysis/HMM-MAR | 16 December 2021, 18:57:04 UTC |
| 3f6a733 | Cam Higgins | 16 December 2021, 18:56:22 UTC | Tiny bug fix | 16 December 2021, 18:56:22 UTC |
| 01c8c13 | Diego Vidaurre | 08 December 2021, 18:50:19 UTC | Minor changes on the mixture of models option (ie not-HMM) | 08 December 2021, 18:50:19 UTC |
| 654f210 | Diego Vidaurre | 06 December 2021, 21:27:44 UTC | Updates relative to new model | 06 December 2021, 21:27:44 UTC |
| 3609e0b | Diego Vidaurre | 01 December 2021, 20:14:19 UTC | Merge branch 'master' of https://github.com/OHBA-analysis/HMM-MAR | 01 December 2021, 20:14:19 UTC |
| 2f88e40 | Diego Vidaurre | 01 December 2021, 20:13:42 UTC | Fixed problem with the initcyc option, spotted by Johan van der Meer | 01 December 2021, 20:13:42 UTC |
| 80fc76e | Diego Vidaurre | 01 December 2021, 19:50:59 UTC | Merge pull request #60 from nikosavola/patch-1 Rename variable in `makeMap.m` | 01 December 2021, 19:50:59 UTC |
| b8999cb | Diego Vidaurre | 30 November 2021, 19:39:17 UTC | fixed bug in hmmtest | 30 November 2021, 19:39:17 UTC |
| f1403fb | Diego Vidaurre | 30 November 2021, 11:24:02 UTC | small change in hmmtest (following a big change) | 30 November 2021, 11:24:02 UTC |
| 1a87e0b | Diego Vidaurre | 29 November 2021, 21:48:59 UTC | Corrected bug in fb_Gamma_inference noted by Johan van der Meer, and updated a lot of other things related to a new model | 29 November 2021, 21:48:59 UTC |
| 1b6691b | Diego Vidaurre | 29 November 2021, 21:33:20 UTC | Important changes on hmmtest (for statistical testing on the HMM results) | 29 November 2021, 21:33:20 UTC |
| a563586 | Diego Vidaurre | 19 November 2021, 15:13:37 UTC | corrected typo in cvfolds | 19 November 2021, 15:13:37 UTC |
| 34e53fb | Diego Vidaurre | 19 November 2021, 15:09:20 UTC | corrected thing in spectbands.m | 19 November 2021, 15:09:20 UTC |
| 5731da4 | Cam Higgins | 19 November 2021, 10:12:26 UTC | Implemented Bayesian sign flipping algorithm | 19 November 2021, 10:12:26 UTC |
| b287197 | Cam Higgins | 19 November 2021, 10:04:25 UTC | Added code to simulate data from a Time-delay embedded model | 19 November 2021, 10:04:25 UTC |
| 126596c | Cam Higgins | 17 November 2021, 15:10:56 UTC | Mostly minor updates for classification code compatibility over different options; also implemneted a cross validated PCA option | 17 November 2021, 15:10:56 UTC |
| 8cc5bcb | Cam Higgins | 03 November 2021, 15:00:24 UTC | minor updates to STRM examples | 03 November 2021, 15:00:24 UTC |
| bfe2927 | Niko Savola | 30 October 2021, 13:59:27 UTC | Rename variable in `makeMap.m` `onconectivity` changed to `onconnectivity` | 30 October 2021, 13:59:27 UTC |
| 0a51f50 | Cam Higgins | 16 September 2021, 15:29:37 UTC | Added script for STRM paper to examples folder | 16 September 2021, 15:29:37 UTC |
| 03bfcf8 | Cam Higgins | 16 September 2021, 11:06:01 UTC | Added condition check to remove unnecessary warnings when TUDA models are fit | 16 September 2021, 11:06:01 UTC |
| cebc8b2 | Cam Higgins | 06 September 2021, 17:40:29 UTC | Amended a small bug in spectral estimation | 06 September 2021, 17:40:29 UTC |
| 07b066e | Cam Higgins | 06 September 2021, 17:33:22 UTC | Merge remote-tracking branch 'refs/remotes/github/master' | 06 September 2021, 17:33:22 UTC |
| 160a212 | Diego Vidaurre | 06 September 2021, 09:38:42 UTC | Updated README and other small thigns | 06 September 2021, 09:38:42 UTC |
| fb0ceed | Niko Savola | 26 August 2021, 06:17:52 UTC | Testing in CI * Matlab release matrix * test result publishing with `EnricoMi/publish-unit-test-result-action` | 26 August 2021, 06:46:10 UTC |
| 3309a94 | Diego Vidaurre | 20 July 2021, 07:05:56 UTC | changed padGamma so that it's not upsampled when downsampling was used in training | 20 July 2021, 07:05:56 UTC |
| dd816ed | Diego Vidaurre | 06 July 2021, 18:05:41 UTC | Solved compatibility issue raised in the last commit | 06 July 2021, 18:05:41 UTC |
| eaa6c69 | Diego Vidaurre | 06 July 2021, 08:18:13 UTC | Update README.md | 06 July 2021, 08:18:13 UTC |
| be0736c | Diego Vidaurre | 06 July 2021, 07:48:56 UTC | Update README.md | 06 July 2021, 07:48:56 UTC |
| ddb7817 | Diego Vidaurre | 01 July 2021, 12:49:33 UTC | fixed bug in cvfolds.m | 01 July 2021, 12:49:33 UTC |
| 710dd64 | Diego Vidaurre | 30 June 2021, 13:32:59 UTC | solved bug in predictPhenotype (on behalf of Theo Karapanagiotidis) | 30 June 2021, 13:32:59 UTC |
| d2d3a3c | Diego Vidaurre | 27 June 2021, 10:53:36 UTC | Some minor changes | 27 June 2021, 10:53:36 UTC |
| 3a619cf | Diego Vidaurre | 27 June 2021, 10:48:05 UTC | update MAR simulations | 27 June 2021, 10:48:05 UTC |
| 2f98a95 | Diego Vidaurre | 27 June 2021, 07:11:36 UTC | Merge pull request #23 from matsvanes/patch-1 Update spectbands.m | 27 June 2021, 07:11:36 UTC |
| 888dd29 | Diego Vidaurre | 18 June 2021, 20:18:46 UTC | Code for Vidaurre et al. (2021) NeuroImage | 18 June 2021, 20:18:46 UTC |
| 3209ce0 | Diego Vidaurre | 14 June 2021, 08:33:30 UTC | Clarified documentation of the prediction functions | 14 June 2021, 08:33:30 UTC |
| 7ba2596 | Diego Vidaurre | 17 May 2021, 10:23:54 UTC | Fixed problem with hmmtestretest.m | 17 May 2021, 10:23:54 UTC |
| 18e4abb | Diego Vidaurre | 14 May 2021, 09:48:20 UTC | update README | 14 May 2021, 09:48:20 UTC |
| 5203d87 | Diego Vidaurre | 14 May 2021, 09:39:55 UTC | Add README (accidentally deleted) | 14 May 2021, 09:39:55 UTC |
| 960c27d | Diego Vidaurre | 14 May 2021, 09:38:34 UTC | Merge branch 'master' of https://github.com/OHBA-analysis/HMM-MAR | 14 May 2021, 09:38:34 UTC |
| e9911e5 | Diego Vidaurre | 14 May 2021, 09:36:15 UTC | Solved an issue with downsamping in stochastic inference | 14 May 2021, 09:36:15 UTC |
| 97a98f4 | Diego Vidaurre | 07 May 2021, 13:21:55 UTC | Update README.md | 07 May 2021, 13:21:55 UTC |
| c61de7b | Cam Higgins | 06 May 2021, 09:59:12 UTC | Updated crucial parameters for STRM model | 06 May 2021, 09:59:12 UTC |
| acdaef5 | Cam Higgins | 06 May 2021, 09:54:50 UTC | Merge branch 'master' of github.com:OHBA-analysis/HMM-MAR | 06 May 2021, 09:54:50 UTC |
| f21af36 | Diego Vidaurre | 15 April 2021, 18:19:05 UTC | Update README.md | 15 April 2021, 18:19:05 UTC |
| 02000a6 | Diego Vidaurre | 09 April 2021, 18:41:37 UTC | Fixed a critical bug in the stochastic inference (introduced in February) | 09 April 2021, 18:41:37 UTC |
| 1b24c3c | Diego Vidaurre | 22 March 2021, 17:04:09 UTC | Updated the example script for HMM-PCA | 22 March 2021, 17:04:09 UTC |
| d98a517 | Cam Higgins | 08 March 2021, 10:12:55 UTC | Merge branch 'master' of github.com:OHBA-analysis/HMM-MAR | 08 March 2021, 10:12:55 UTC |
| 1ac99ee | Diego Vidaurre | 05 March 2021, 22:39:15 UTC | fill an issue with CV when zeromean is used | 05 March 2021, 22:39:15 UTC |
| 46d2811 | Diego Vidaurre | 04 March 2021, 19:21:47 UTC | solve recently introduced issue with stochastic learning | 04 March 2021, 19:21:47 UTC |
| ec9225b | Diego Vidaurre | 04 March 2021, 08:21:15 UTC | fixed an issue with cross-validation when using parallel computing | 04 March 2021, 08:21:15 UTC |
| bd802fe | Diego Vidaurre | 03 March 2021, 22:24:58 UTC | several fixes, one particularly important, for an error introduced on 16Feb | 03 March 2021, 22:24:58 UTC |
| ed1d887 | Cam Higgins | 01 March 2021, 10:01:46 UTC | Small bug fix | 01 March 2021, 10:01:46 UTC |
| a2089cf | Diego Vidaurre | 16 February 2021, 19:43:40 UTC | Fixed an error that made the initialisation quite inefficient (importnat one) | 16 February 2021, 19:43:40 UTC |
| 23528ce | Diego Vidaurre | 16 February 2021, 10:03:14 UTC | Merge branch 'master' of https://github.com/OHBA-analysis/HMM-MAR | 16 February 2021, 10:03:14 UTC |
| e5f20c2 | vidaurre | 16 February 2021, 10:00:43 UTC | added checkData.m, to check the dimensions data and its conformity with T | 16 February 2021, 10:00:43 UTC |
| 7615c48 | Cam Higgins | 11 February 2021, 15:20:58 UTC | Added sliding window and K=1 options for baseline decoding comparisons | 11 February 2021, 15:20:58 UTC |
