Revision 7fd8dfca2da167789c2afa83e02cf2bc302fdb06 authored by Nate Coraor on 08 February 2013, 16:21:50 UTC, committed by Nate Coraor on 08 February 2013, 16:21:50 UTC
run.sh
#!/bin/sh
cd `dirname $0`
python ./scripts/check_python.py
[ $? -ne 0 ] && exit 1
SAMPLES="
community_wsgi.ini.sample
datatypes_conf.xml.sample
external_service_types_conf.xml.sample
migrated_tools_conf.xml.sample
reports_wsgi.ini.sample
shed_tool_conf.xml.sample
tool_conf.xml.sample
shed_tool_data_table_conf.xml.sample
tool_data_table_conf.xml.sample
tool_sheds_conf.xml.sample
openid_conf.xml.sample
universe_wsgi.ini.sample
tool-data/shared/ncbi/builds.txt.sample
tool-data/shared/ensembl/builds.txt.sample
tool-data/shared/ucsc/builds.txt.sample
tool-data/shared/ucsc/publicbuilds.txt.sample
tool-data/shared/igv/igv_build_sites.txt.sample
tool-data/shared/rviewer/rviewer_build_sites.txt.sample
tool-data/*.sample
static/welcome.html.sample
"
# Create any missing config/location files
for sample in $SAMPLES; do
file=`echo $sample | sed -e 's/\.sample$//'`
if [ ! -f "$file" -a -f "$sample" ]; then
echo "Initializing $file from `basename $sample`"
cp $sample $file
fi
done
if [ -n "$GALAXY_UNIVERSE_CONFIG_DIR" ]; then
python ./scripts/build_universe_config.py "$GALAXY_UNIVERSE_CONFIG_DIR"
fi
# explicitly attempt to fetch eggs before running
FETCH_EGGS=1
for arg in "$@"; do
[ "$arg" = "--stop-daemon" ] && FETCH_EGGS=0; break
done
if [ $FETCH_EGGS -eq 1 ]; then
python ./scripts/check_eggs.py -q
if [ $? -ne 0 ]; then
echo "Some eggs are out of date, attempting to fetch..."
python ./scripts/fetch_eggs.py
if [ $? -eq 0 ]; then
echo "Fetch successful."
else
echo "Fetch failed."
exit 1
fi
fi
fi
if [ -n "$GALAXY_RUN_ALL" ]; then
servers=`sed -n 's/^\[server:\(.*\)\]/\1/ p' universe_wsgi.ini | xargs echo`
daemon=`echo "$@" | grep -q daemon`
if [ $? -ne 0 ]; then
echo 'ERROR: $GALAXY_RUN_ALL cannot be used without the `--daemon` or `--stop-daemon` arguments to run.sh'
exit 1
fi
for server in $servers; do
echo "Handling $server with log file $server.log..."
python ./scripts/paster.py serve universe_wsgi.ini --server-name=$server --pid-file=$server.pid --log-file=$server.log $@
done
else
python ./scripts/paster.py serve universe_wsgi.ini $@
fi
Computing file changes ...