Package: onemap
Title: Construction of Genetic Maps in Experimental Crosses
Version: 3.0.0
Description: Analysis of molecular marker data from model (backcrosses,
    F2 and recombinant inbred lines) and non-model systems (i. e.
    outcrossing species). For the later, it allows statistical
    analysis by simultaneously estimating linkage and linkage
    phases (genetic map construction) according to Wu et al. (2002)
    <doi:10.1006/tpbi.2002.1577>. All analysis are based on multipoint 
    approaches using hidden Markov models.
Authors@R: c(person("Gabriel", 
                    "Margarido", 
                    role = "aut",
                    email = "gramarga@usp.br"), 
             person("Marcelo", 
                    "Mollinari", 
                    role = "aut"), 
             person("Cristiane", 
                    "Taniguti", 
                    role=c("ctb", "cre"), 
                    email="chtaniguti@tamu.edu"),
             person("Getulio", 
                    "Ferreira", 
                    role="ctb"),
             person("Rodrigo", 
                    "Amadeu", 
                    role = "ctb"),
             person("Karl",
                    "Broman", 
                    role = "ctb"),
            person(given = "Katharine",
                    family = "Preedy",
                    role = c("ctb", "cph"),
                    comment = "MDS ordering algorithm"),
            person(given = "Bastian", 
                    family = "Schiffthaler", 
                    role = c("ctb","cph"),
                    comment = "HMM parallelization"),        
             person("Augusto", 
                    "Garcia", 
                    role = c("aut", "ctb"), 
                    email = "augusto.garcia@usp.br"))
Author: Gabriel Margarido [aut],
  Marcelo Mollinari [aut],
  Cristiane Taniguti [ctb, cre],
  Getulio Ferreira [ctb],
  Rodrigo Amadeu [ctb],
  Karl Broman [ctb],
  Katharine Preedy [ctb, cph] (MDS ordering algorithm),
  Bastian Schiffthaler [ctb, cph] (HMM parallelization),
  Augusto Garcia [aut, ctb]
LinkingTo: Rcpp (>= 0.10.5)
Depends: R (>= 3.6.0)
Imports: ggplot2 (>= 2.2.1), plotly (>= 4.7.1), reshape2 (>= 1.4.1),
        Rcpp (>= 0.10.5), graphics, methods, stats, utils, grDevices,
        smacof, princurve, parallel, dplyr, tidyr, htmlwidgets, ggpubr,
        RColorBrewer, dendextend, rebus, vcfR (>= 1.6.0)
Suggests: knitr (>= 1.10), rmarkdown, testthat, stringr
VignetteBuilder: knitr
Encoding: UTF-8
License: GPL-3
URL: https://github.com/augusto-garcia/onemap
BugReports: https://github.com/augusto-garcia/onemap/wiki
Maintainer: Cristiane Taniguti <chtaniguti@tamu.edu>
Repository: CRAN
Packaged: 2022-11-26 04:36:06 UTC; chtan
NeedsCompilation: yes
Date/Publication: 2022-11-26 05:00:02 UTC
RoxygenNote: 7.1.2
biocViews: