Revision 86d380144b3f85c8951923de873893583bd25edf authored by narendramukherjee on 01 October 2020, 17:54:51 UTC, committed by GitHub on 01 October 2020, 17:54:51 UTC
Change marking of trial start time
blech_hdf5_repack.py
import os
import tables
import easygui
# Get directory where the hdf5 file sits, and change to that directory
dir_name = easygui.diropenbox()
os.chdir(dir_name)
# Look for the hdf5 file in the directory
file_list = os.listdir('./')
hdf5_name = ''
for files in file_list:
if files[-2:] == 'h5':
hdf5_name = files
# Use ptrepack to save a clean and fresh copy of the hdf5 file as tmp.hf5
os.system("ptrepack --chunkshape=auto --propindexes --complevel=9 --complib=blosc " + hdf5_name + " " + "tmp.h5")
# Delete the old hdf5 file
os.remove(hdf5_name)
# And rename the new file with the same old name
os.rename("tmp.h5", hdf5_name)
Computing file changes ...
