Revision 87242e49a6768ac5c75cce35ec7602366c698805 authored by Emmanuel Paradis on 27 August 2002, 00:00:00 UTC, committed by Gabor Csardi on 27 August 2002, 00:00:00 UTC
0 parent
INDEX
GC.content Content in GC from DNA Sequences
all.equal.phylo Global Comparison of two Phylogenies
ape-internal Internal Ape Functions
balance Balance of a Dichotomous Phylogenetic Tree
base.freq Base frequencies from DNA Sequences
branching.times Branching Times of a Phylogenetic Tree
cherry Number of Cherries and Null Models of Trees
compar.gee Comparative Analysis with GEEs
compar.lynch Lynch's Comparative Method
dist.dna Pairwise Distances from DNA Sequences
dist.gene Pairwise Distances from Genetic Data
dist.phylo Pairwise Distances from a Phylogenetic Tree
diversi.gof Tests of Constant Diversification Rates
diversi.time Analysis of Diversification with Survival
Models
gamma.stat Gamma-Statistic of Pybus and Harvey
heterozygosity Heterozygosity at a Locus Using Gene
Frequencies
ltt.plot Lineages Through Time Plot
mantel.test Mantel Test for Similarity of Two Matrices
mst Minimum Spanning Tree
pic Phylogenetically Independent Contrasts
plot.phylo Plot Phylogenies
read.GenBank Read DNA Sequences from GenBank via Internet
read.tree Read Tree File in Parenthetic Format
skyline.plot Skyline Plot of Estimated Effective Population
Size
theta.h Population Parameter THETA using Homozigosity
theta.k Population Parameter THETA using Expected
Number of Alleles
theta.s Population Parameter THETA using Segregating
Sites in DNA Sequences
vcv.phylo Phylogenetic Variance-covariance or Correlation
Matrix
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