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https://github.com/genome/genome
23 March 2024, 19:04:16 UTC
Revision 872f95affa04fd0f43bb77e1b49d51828ff49471 authored by Susanna Kiwala on 01 December 2015, 17:54:55 UTC, committed by Susanna Kiwala on 01 December 2015, 17:54:55 UTC 
Merge pull request #1136 from susannasiebert/qc_framework_verify_bam_id_vcf_part3
 
Bugfixes for ImportGenotypeVcfFile command
2 parent s 9037c98 + 0a3c60b
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Tip revision: 872f95affa04fd0f43bb77e1b49d51828ff49471 authored by Susanna Kiwala on 01 December 2015, 17:54:55 UTC
Merge pull request #1136 from susannasiebert/qc_framework_verify_bam_id_vcf_part3
Tip revision: 872f95a
rebuild-meta-db 
#!/bin/bash
set -o errexit

echo "Creating SQLite DBs:"
for DB_TXT in $(find $WORKSPACE -iname '*sqlite3-dump' -or -iname '*sqlite3n-dump'); do
    DB_BIN=${DB_TXT/-dump/}
    rm -f "$DB_BIN"
    sqlite3 "$DB_BIN" < "$DB_TXT"
    echo -e "\t${DB_BIN/$WORKSPACE\//}"
done
echo "Done creating SQLite DBs."
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