Revision - 87b99a2 - + adjust the chi-squared test inputs - origin: https://github.com/genome/genome

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https://github.com/genome/genome

23 March 2024, 19:04:16 UTC

Revision 87b99a20d8c033b1914fd2a9d1044e077ff55511 authored by Indraniel Das on 17 March 2015, 16:34:19 UTC, committed by Indraniel Das on 17 March 2015, 21:09:28 UTC

+ adjust the chi-squared test inputs

  - don't use run the tests on the log of the Alignment Counts, rather
    scale the alignment counts by a factor of 10000.  This reduced
    number will allow for greater variability on the alignment counts.

  - remove the epsilon logic, we don't need it anymore now that the
    logarithms aren't being used anymore.  This was introduced for fault
    tolerance, a log(0) is undefined.

1 parent 997f6de

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Tip revision: 87b99a20d8c033b1914fd2a9d1044e077ff55511 authored by Indraniel Das on 17 March 2015, 16:34:19 UTC
+ adjust the chi-squared test inputs

Tip revision: 87b99a2

File	Mode	Size
alignment_summary @ 8932081
bam-readcount @ c044123
bam-window @ 572bfaf
bassovac @ 41b7bc4
bin
bmm @ 311e4d9
breakdancer @ 8f07f3d
configuration-manager @ f719544
copyCat @ 78b25a7
cron @ 584bc07
fqgrep @ fe0206d
genome-db-cosmic @ bdec904
genome-db-omim @ d9b949a
genome-db-pfam @ e5acfb0
genome-env-tests
genome-music
genome-music-testdata @ 860ea75
genome-snapshot-deps @ 7d13e9e
genome-snapshot-testdata @ 72c0ded
genome-sys-user
genome-webserver
genome-www
getopt-complete @ 2dc69f2
gms-config @ 6ccaa62
gmt-sys-vmbuilder
graphite @ 8a08a11
hooks
init
jenkins @ e661237
joinx @ e83e763
lib
pairoscope @ 5fdcd27
sciClone @ 723cadc
scripts
sff2fastq @ b815f97
somatic-sniper @ b83aab3
sqitch
tgi-etc @ 08ba1a6
tigra @ 6fe6b74
tigra-sv @ 715dda8
ur @ 7e7d60a
varscan @ 83ae9d8
vendor
workflow @ 541917f
.gitignore	-rw-r--r--	302 bytes
.gitmodules	-rw-r--r--	9.8 KB
.mailmap	-rw-r--r--	301 bytes
.test-tracker.conf	-rw-r--r--	365 bytes
LICENSE	-rw-r--r--	7.5 KB
README	-rw-r--r--	618 bytes
WHERE_TO_PUT_CODE	-rw-r--r--	2.4 KB
create-c-project.sh	-rwxr-xr-x	2.9 KB
create-project	-rwxr-xr-x	2.9 KB
test-data-relocate-me	l---------	55 bytes

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https://github.com/genome/genome

+ adjust the chi-squared test inputs

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