https://github.com/carlosp420/VoSeq
Revision 8900e82704715d48011ad474264827b6ed6932a4 authored by carlosp420 on 09 April 2017, 15:11:00 UTC, committed by carlosp420 on 09 April 2017, 15:11:00 UTC
1 parent 4ed1034
Raw File
Tip revision: 8900e82704715d48011ad474264827b6ed6932a4 authored by carlosp420 on 09 April 2017, 15:11:00 UTC
updated build instructions of docs
Tip revision: 8900e82
news.html


<!DOCTYPE html>
<!--[if IE 8]><html class="no-js lt-ie9" lang="en" > <![endif]-->
<!--[if gt IE 8]><!--> <html class="no-js" lang="en" > <!--<![endif]-->
<head>
  <meta charset="utf-8">
  
  <meta name="viewport" content="width=device-width, initial-scale=1.0">
  
  <title>News &mdash; VoSeq 2.0.0-beta documentation</title>
  

  
  
    <link rel="shortcut icon" href="static/favicon.ico"/>
  
  
  

  

  
  
    

  

  
  
    <link rel="stylesheet" href="static/css/theme.css" type="text/css" />
  

  

  
        <link rel="index" title="Index"
              href="genindex.html"/>
        <link rel="search" title="Search" href="search.html"/>
    <link rel="top" title="VoSeq 2.0.0-beta documentation" href="index.html"/>
        <link rel="next" title="Frequently Asked Questions" href="faq.html"/>
        <link rel="prev" title="Welcome to VoSeq 2.0.0-beta documentation!" href="index.html"/> 

  
  <script src="static/js/modernizr.min.js"></script>

</head>

<body class="wy-body-for-nav" role="document">

   
  <div class="wy-grid-for-nav">

    
    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
      <div class="wy-side-scroll">
        <div class="wy-side-nav-search">
          

          
            <a href="index.html" class="icon icon-home"> VoSeq
          

          
          </a>

          
            
            
              <div class="version">
                2.0.0-beta
              </div>
            
          

          
<div role="search">
  <form id="rtd-search-form" class="wy-form" action="search.html" method="get">
    <input type="text" name="q" placeholder="Search docs" />
    <input type="hidden" name="check_keywords" value="yes" />
    <input type="hidden" name="area" value="default" />
  </form>
</div>

          
        </div>

        <div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="main navigation">
          
            
            
              
            
            
              <ul class="current">
<li class="toctree-l1 current"><a class="current reference internal" href="#">News</a><ul>
<li class="toctree-l2"><a class="reference internal" href="#aug-2015">07 Aug 2015</a></li>
<li class="toctree-l2"><a class="reference internal" href="#mar-2013">28 Mar 2013</a></li>
</ul>
</li>
<li class="toctree-l1"><a class="reference internal" href="faq.html">Frequently Asked Questions</a></li>
</ul>
<ul>
<li class="toctree-l1"><a class="reference internal" href="intro/overview.html">VoSeq overview</a></li>
<li class="toctree-l1"><a class="reference internal" href="intro/install.html">Download to install VoSeq</a></li>
<li class="toctree-l1"><a class="reference internal" href="intro/install.html#installation-guide">Installation guide</a></li>
<li class="toctree-l1"><a class="reference internal" href="intro/administrate-server.html">Administrate the server with your installation of VoSeq</a></li>
<li class="toctree-l1"><a class="reference internal" href="usage/adding-vouchers.html">Adding vouchers</a></li>
<li class="toctree-l1"><a class="reference internal" href="usage/adding-genes.html">Adding genes</a></li>
<li class="toctree-l1"><a class="reference internal" href="usage/adding-sequences.html">Adding sequences</a></li>
<li class="toctree-l1"><a class="reference internal" href="usage/create-taxonset.html">Create taxonset</a></li>
<li class="toctree-l1"><a class="reference internal" href="usage/create-datasets.html">Create datasets</a></li>
<li class="toctree-l1"><a class="reference internal" href="usage/search.html">Search</a></li>
<li class="toctree-l1"><a class="reference internal" href="usage/upload-voucher-photos.html">Upload voucher photos</a></li>
<li class="toctree-l1"><a class="reference internal" href="usage/create-voucher-table.html">Create Voucher table</a></li>
<li class="toctree-l1"><a class="reference internal" href="usage/update-voucher.html">Update voucher</a></li>
<li class="toctree-l1"><a class="reference internal" href="update-voseq.html">How to update Voseq</a></li>
<li class="toctree-l1"><a class="reference internal" href="migrate-mysql.html">Migrate VoSeq&#8217;s MySQL database</a></li>
<li class="toctree-l1"><a class="reference internal" href="plugins.html">Plugins</a></li>
<li class="toctree-l1"><a class="reference internal" href="authors.html">Authors</a></li>
<li class="toctree-l1"><a class="reference internal" href="thanks.html">Thanks</a></li>
<li class="toctree-l1"><a class="reference internal" href="dev/development.html">Development of VoSeq</a></li>
</ul>

            
          
        </div>
      </div>
    </nav>

    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap">

      
      <nav class="wy-nav-top" role="navigation" aria-label="top navigation">
        
          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
          <a href="index.html">VoSeq</a>
        
      </nav>


      
      <div class="wy-nav-content">
        <div class="rst-content">
          















<div role="navigation" aria-label="breadcrumbs navigation">

  <ul class="wy-breadcrumbs">
    
      <li><a href="index.html">Docs</a> &raquo;</li>
        
      <li>News</li>
    
    
      <li class="wy-breadcrumbs-aside">
        
            
            <a href="sources/news.txt" rel="nofollow"> View page source</a>
          
        
      </li>
    
  </ul>

  
  <hr/>
</div>
          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
           <div itemprop="articleBody">
            
  <div class="section" id="news">
<h1>News<a class="headerlink" href="#news" title="Permalink to this headline">¶</a></h1>
<div class="admonition note">
<p class="first admonition-title">Note</p>
<p class="last">Here we will describe new information regarding VoSeq, as well as list
changes in new versions of the software.</p>
</div>
<div class="section" id="aug-2015">
<h2>07 Aug 2015<a class="headerlink" href="#aug-2015" title="Permalink to this headline">¶</a></h2>
<p>Launched pre-release version 2.0.0-beta. This is a complete rewrite of the source
code in Python. Faster, better, modular.</p>
</div>
<div class="section" id="mar-2013">
<h2>28 Mar 2013<a class="headerlink" href="#mar-2013" title="Permalink to this headline">¶</a></h2>
<p>As of version 1.5.0 we have implemented more information to be stored and used
for genes and alignments!</p>
<blockquote>
<div><ul class="simple">
<li>For example introns (or other non-wanted regions), and genetic codes and
reading frames for protein coding genes are now set for each gene.</li>
<li>Now can also gene tables be made with characteristics for each
gene/alignment (for chosen taxonset) such as length, gene type, parsimony
informative sites, nucleotide content etc.</li>
</ul>
</div></blockquote>
<p>We have tried out a perhaps easier way of installation for Apache, MySQL and PHP
with the XAMPP package (<a class="reference external" href="http://www.apachefriends.org/en/xampp.html">http://www.apachefriends.org/en/xampp.html</a>).
See installation instructions for windows systems. Hope it makes things easier!</p>
</div>
</div>


           </div>
           <div class="articleComments">
            
           </div>
          </div>
          <footer>
  
    <div class="rst-footer-buttons" role="navigation" aria-label="footer navigation">
      
        <a href="faq.html" class="btn btn-neutral float-right" title="Frequently Asked Questions" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right"></span></a>
      
      
        <a href="index.html" class="btn btn-neutral" title="Welcome to VoSeq 2.0.0-beta documentation!" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left"></span> Previous</a>
      
    </div>
  

  <hr/>

  <div role="contentinfo">
    <p>
        &copy; Copyright 2013-2015, Carlos Peña, Tobias Malm.
      Last updated on Apr 09, 2017.

    </p>
  </div>
  Built with <a href="http://sphinx-doc.org/">Sphinx</a> using a <a href="https://github.com/snide/sphinx_rtd_theme">theme</a> provided by <a href="https://readthedocs.org">Read the Docs</a>. 

</footer>

        </div>
      </div>

    </section>

  </div>
  


  

    <script type="text/javascript">
        var DOCUMENTATION_OPTIONS = {
            URL_ROOT:'./',
            VERSION:'2.0.0-beta',
            COLLAPSE_INDEX:false,
            FILE_SUFFIX:'.html',
            HAS_SOURCE:  true,
            SOURCELINK_SUFFIX: ''
        };
    </script>
      <script type="text/javascript" src="static/jquery.js"></script>
      <script type="text/javascript" src="static/underscore.js"></script>
      <script type="text/javascript" src="static/doctools.js"></script>

  

  
  
    <script type="text/javascript" src="static/js/theme.js"></script>
  

  
  
  <script type="text/javascript">
      jQuery(function () {
          SphinxRtdTheme.StickyNav.enable();
      });
  </script>
   

</body>
</html>
back to top