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https://github.com/splatlab/squeakr
09 January 2021, 06:17:54 UTC
Revision 8940c94c790f335029b00e1824912bb5f48ed26a authored by Prashant Pandey on 04 February 2017, 23:21:09 UTC, committed by Prashant Pandey on 04 February 2017, 23:21:09 UTC 
Adding code for Squeakr.
1 parent 4a94369
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Tip revision: 8940c94c790f335029b00e1824912bb5f48ed26a authored by Prashant Pandey on 04 February 2017, 23:21:09 UTC
Adding code for Squeakr.
Tip revision: 8940c94
Makefile 
CXX = g++ -std=c++11

#CXXFLAGS = -Wall -g -I. -pthread -Wno-unused-result -Wno-strict-aliasing
#CXXFLAGS = -Wall -Ofast -m64 -I. -Wno-unused-result -Wno-strict-aliasing -DLOG_WAIT_TIME -DLOG_CLUSTER_LENGTH
CXXFLAGS = -Wall -Ofast -m64 -I. -Wno-unused-result -Wno-strict-aliasing

LDFLAGS = -lpthread -lssl -lcrypto -lboost_system -lboost_thread
LIBS = libs/libbz2.a libs/libz.a

TARGET_MAIN	= main
MAIN_SRC = main.cc hashutil.cc threadsafe-gqf/gqf.c

TARGET_INNER_PROD = inner-prod
INNER_PROD_SRC = kmer_inner_prod.cc hashutil.cc threadsafe-gqf/gqf.c

$(TARGET_MAIN): $(MAIN_SRC)
	$(CXX) $(CXXFLAGS) $(MAIN_SRC) $(INCLUDE) $(LDFLAGS) $(LIBS) -o $@

$(TARGET_INNER_PROD): $(INNER_PROD_SRC)
	$(CXX) $(CXXFLAGS) $(INNER_PROD_SRC) $(INCLUDE) $(LDFLAGS) $(LIBS) -o $@

clean:
	rm -f $(TARGET_MAIN) $(TARGET_INNER_PROD) *.o core
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