Skip to main content

Browse the archive

https://github.com/genome/genome
23 March 2024, 19:04:16 UTC
Revision 8b6ab63739bf6f53a2830d791a5492adead44bff authored by Nathan Nutter on 08 July 2013, 14:54:26 UTC, committed by Nathan Nutter on 08 July 2013, 14:54:26 UTC 
Merge branch 'RT/91739'
 
CHANGELOG: New sort order in `gmt bed chrom-sort` which is used as the default
sorter in DV2.  This will correct a sort incompatability between some DV2
results and JoinX.  Any existing DV2 results affected by the sort
incompatability will need to be set aside.  If you get a sort error from JoinX
like 'Unsorted data found in stream...' then your DV2 results may be affected.
Currently only builds that use GRCh37-lite-+-HPV_Redux-build (116426356) are
known to be affected.
2 parent s ea5ed9c + 5a0d8af
History
Tip revision: 8b6ab63739bf6f53a2830d791a5492adead44bff authored by Nathan Nutter on 08 July 2013, 14:54:26 UTC
Merge branch 'RT/91739'
Tip revision: 8b6ab63
File Mode Size
alignment_summary @ 8932081
bam-readcount @ c044123
bam-window @ 572bfaf
bassovac @ 41b7bc4
bin
bmm @ a1d0107
breakdancer @ 8f07f3d
configuration-manager @ f719544
copyCat @ 78b25a7
cron @ 9bb5f1f
fqgrep @ fe0206d
genome-db-cosmic @ bdec904
genome-db-omim @ d9b949a
genome-db-pfam @ e5acfb0
genome-music
genome-music-testdata @ 860ea75
genome-snapshot-deps @ 7cebeb9
genome-snapshot-testdata @ 72c0ded
genome-sys-user
genome-webserver
genome-www
getopt-complete @ 95e944c
gms-config @ 6ccaa62
gmt-sys-vmbuilder
graphite @ c3cea89
init
jenkins @ 7d4e5d2
joinx @ e83e763
lib
pairoscope @ 5fdcd27
sciClone @ d91163a
scripts
sff2fastq @ b815f97
somatic-sniper @ b83aab3
tgi-etc @ 08ba1a6
tigra @ 6fe6b74
tigra-sv @ 715dda8
ur @ f34959a
varscan @ 83ae9d8
vendor
workflow @ 0092917
.gitignore -rw-r--r-- 302 bytes
.gitmodules -rw-r--r-- 9.0 KB
.mailmap -rw-r--r-- 301 bytes
.test-tracker.conf -rw-r--r-- 329 bytes
LICENSE -rw-r--r-- 7.5 KB
README -rw-r--r-- 155 bytes
WHERE_TO_PUT_CODE -rw-r--r-- 2.4 KB
compile_modules.t -rw-r--r-- 1.9 KB
create-c-project.sh -rwxr-xr-x 2.9 KB
create-project -rwxr-xr-x 2.9 KB
test-data-relocate-me l--------- 46 bytes

README

back to top