Revision - 8b86f4b - VariantReporting subsystem works on files not just builds - origin: https://github.com/genome/genome

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https://github.com/genome/genome

23 March 2024, 19:04:16 UTC

Revision 8b86f4b7be8e3bf9407af93651f2f365ee54ba37 authored by dmorton on 02 July 2014, 17:21:59 UTC, committed by dmorton on 05 July 2014, 17:47:33 UTC

VariantReporting subsystem works on files not just builds

The ResourceProvider replaces the build, at least conceptually.  Running
on a build will consist of generating a ResourceProvider first, and then
running the subsystem.  This commit is a regression in that sense,
because running on a build has been disabled for now.

The ReportGeneratorWrapper goes away entirely, since translations can be
provided by the ResourceProvider.

Expert commands accept files instead of objects for the most part, and
when they need objects from the ResourceProvider, they are given ids
only.

1 parent a985eeb

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Tip revision: 8b86f4b7be8e3bf9407af93651f2f365ee54ba37 authored by dmorton on 02 July 2014, 17:21:59 UTC
VariantReporting subsystem works on files not just builds

Tip revision: 8b86f4b

File	Mode	Size
alignment_summary @ 8932081
bam-readcount @ c044123
bam-window @ 572bfaf
bassovac @ 41b7bc4
bin
bmm @ 311e4d9
breakdancer @ 8f07f3d
configuration-manager @ f719544
copyCat @ 78b25a7
cron @ 584bc07
fqgrep @ fe0206d
genome-db-cosmic @ bdec904
genome-db-omim @ d9b949a
genome-db-pfam @ e5acfb0
genome-music
genome-music-testdata @ 860ea75
genome-snapshot-deps @ a7f9bd1
genome-snapshot-testdata @ 72c0ded
genome-sys-user
genome-webserver
genome-www
getopt-complete @ 2dc69f2
gms-config @ 6ccaa62
gmt-sys-vmbuilder
graphite @ d587278
hooks
init
jenkins @ 5b180ee
joinx @ e83e763
lib
pairoscope @ 5fdcd27
sciClone @ 723cadc
scripts
sff2fastq @ b815f97
somatic-sniper @ b83aab3
sqitch
tgi-etc @ 08ba1a6
tigra @ 6fe6b74
tigra-sv @ 715dda8
ur @ 2c4ed48
varscan @ 83ae9d8
vendor
workflow @ 44229b0
.gitignore	-rw-r--r--	302 bytes
.gitmodules	-rw-r--r--	9.7 KB
.mailmap	-rw-r--r--	301 bytes
.test-tracker.conf	-rw-r--r--	365 bytes
LICENSE	-rw-r--r--	7.5 KB
README	-rw-r--r--	155 bytes
WHERE_TO_PUT_CODE	-rw-r--r--	2.4 KB
create-c-project.sh	-rwxr-xr-x	2.9 KB
create-project	-rwxr-xr-x	2.9 KB
test-data-relocate-me	l---------	46 bytes

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https://github.com/genome/genome

VariantReporting subsystem works on files not just builds

README