https://github.com/genome/genome
Revision 8b86f4b7be8e3bf9407af93651f2f365ee54ba37 authored by dmorton on 02 July 2014, 17:21:59 UTC, committed by dmorton on 05 July 2014, 17:47:33 UTC
The ResourceProvider replaces the build, at least conceptually. Running on a build will consist of generating a ResourceProvider first, and then running the subsystem. This commit is a regression in that sense, because running on a build has been disabled for now. The ReportGeneratorWrapper goes away entirely, since translations can be provided by the ResourceProvider. Expert commands accept files instead of objects for the most part, and when they need objects from the ResourceProvider, they are given ids only.
1 parent a985eeb
Tip revision: 8b86f4b7be8e3bf9407af93651f2f365ee54ba37 authored by dmorton on 02 July 2014, 17:21:59 UTC
VariantReporting subsystem works on files not just builds
VariantReporting subsystem works on files not just builds
Tip revision: 8b86f4b
create-project
#!/bin/bash
GIT_SRV=git
GIT_PATH=/srv/git
SKEL_URL=ssh://$GIT_SRV$GIT_PATH/example-c-project.git
DO_PUSH=1
[ -z "$TMPDIR" ] && TMPDIR=/tmp
function bail() {
echo $1
exit 1
}
function usage() {
echo "Usage: `basename $0` [-n] <project name>"
echo " Initialize a new c/c++ project"
echo ""
echo "Options:"
echo " -h|--help - this message"
echo " -n|--no-push - do not automatically commit and push the new subrepo"
}
function enforce_clean_master() {
branch=`git branch | perl -ne 's/^\* // && print'`
if [ "$branch" != "master" ]
then
bail "This program must be run on branch master, you are on branch $branch"
fi
git fetch || bail "git fetch failed"
git status -uno | grep -A1 '^# Your branch ' &&
bail "Your branch is not in sync with the remote repo, pull/push first"
git push origin master --dry-run > /dev/null 2>&1 ||
bail "git push --dry-run failed, please make sure your repo is in sync with the remote (pull/push)."
}
function create_git_repo() {
name=$1
repo_path=$GIT_PATH/$name.git
ssh $GIT_SRV "if [ ! -e $repo_path ]; then mkdir $repo_path && cd $repo_path && git init --bare --shared; else echo $repo_path already exists on server $GIT_SRV; exit 1; fi"
[ $? -ne 0 ] && {
echo "Aborted."
exit 1
}
(pushd $TMPDIR && git clone ssh://$GIT_SRV/$repo_path &&
pushd $name && touch .gitignore &&
git add .gitignore && git commit -m 'added .gitignore' && git push origin master &&
popd && rm -rf $name) || {
echo "Failed to set up repository $name"
exit 1
}
git submodule add ssh://$GIT_SRV/$repo_path || {
echo "Failed to set up submodule for $name"
exit 1
}
}
function create_project_skel() {
git archive --remote $SKEL_URL master | tar xf -
}
# main -------------------------------------------------------------------
enforce_clean_master
project_name=
while [ $# -gt 0 ]; do
case $1 in
-h|--help) usage; exit 0 ;;
-n|--no-push) DO_PUSH=0 ;;
-*) bail "Unexpected argument: $1" ;;
*) [ "$project_name" != "" ] && {
bail "Multiple project names specified: '$project_name' and '$1'"
}
project_name=$1
;;
esac
shift
done
if [ -z "$project_name" ]; then
echo "Error: no project name specified"
usage
exit 1
fi
[ -e $project_name ] && {
echo "Error: something named $project_name already exists in `pwd`"
ls -ld $project_name
exit 1
}
echo ""
echo "Create new project named $project_name? (y/n)"
while read ans; do
case $ans in
y*) break;;
n*) echo "Aborted"; exit 1;;
*) echo "Please anwser y or n";;
esac
done
create_git_repo $project_name
git add $project_name
[ $DO_PUSH -eq 1 ] && {
git pull
git commit -m "Added submodule $project_name"
git push
echo "** pushed changes"
}
git status
echo "Completed."
Computing file changes ...