Revision 8c334b90ab166f529acb1ac6d789dc9a0626f3dc authored by Lars Bilke on 25 January 2022, 14:07:06 UTC, committed by Lars Bilke on 25 January 2022, 14:07:06 UTC
[ci] Job linux native builds Debug config with optimizations See merge request ogs/ogs!3597
TESReactionAdaptor.cpp
/**
* \file
* \copyright
* Copyright (c) 2012-2022, OpenGeoSys Community (http://www.opengeosys.org)
* Distributed under a Modified BSD License.
* See accompanying file LICENSE.txt or
* http://www.opengeosys.org/project/license
*
*/
#include "TESReactionAdaptor.h"
#include <cassert>
#include "MaterialLib/Adsorption/Adsorption.h"
#include "MaterialLib/Adsorption/ReactionInert.h"
#include "MaterialLib/Adsorption/ReactionSinusoidal.h"
#include "MathLib/Nonlinear/Root1D.h"
#include "MathLib/ODE/ODESolverBuilder.h"
#include "TESLocalAssemblerInner.h"
namespace ProcessLib
{
namespace TES
{
std::unique_ptr<TESFEMReactionAdaptor> TESFEMReactionAdaptor::newInstance(
TESLocalAssemblerData const& data)
{
auto const* ads = data.ap.react_sys.get();
if (dynamic_cast<Adsorption::AdsorptionReaction const*>(ads) != nullptr)
{
return std::make_unique<TESFEMReactionAdaptorAdsorption>(data);
}
if (dynamic_cast<Adsorption::ReactionInert const*>(ads) != nullptr)
{
return std::make_unique<TESFEMReactionAdaptorInert>(data);
}
if (dynamic_cast<Adsorption::ReactionSinusoidal const*>(ads) != nullptr)
{
return std::make_unique<TESFEMReactionAdaptorSinusoidal>(data);
}
if (dynamic_cast<Adsorption::ReactionCaOH2 const*>(ads) != nullptr)
{
return std::make_unique<TESFEMReactionAdaptorCaOH2>(data);
}
OGS_FATAL("No suitable TESFEMReactionAdaptor found. Aborting.");
return nullptr;
}
TESFEMReactionAdaptorAdsorption::TESFEMReactionAdaptorAdsorption(
TESLocalAssemblerData const& data)
// caution fragile: this relies in this constructor b eing called __after__
// data.solid_density has been properly set up!
: _bounds_violation(data.solid_density.size(), false), _d(data)
{
assert(dynamic_cast<Adsorption::AdsorptionReaction const*>(
data.ap.react_sys.get()) != nullptr &&
"Reactive system has wrong type.");
assert(!_bounds_violation.empty());
}
ReactionRate
TESFEMReactionAdaptorAdsorption::initReaction_slowDownUndershootStrategy(
const unsigned int_pt)
{
assert(_d.ap.number_of_try_of_iteration <= 20);
const double loading = Adsorption::AdsorptionReaction::getLoading(
_d.solid_density_prev_ts[int_pt], _d.ap.rho_SR_dry);
double react_rate_R =
_d.ap.react_sys->getReactionRate(_d.p_V, _d.T, _d.ap.M_react, loading) *
_d.ap.rho_SR_dry;
// set reaction rate based on current damping factor
react_rate_R = (_reaction_damping_factor > 1e-3)
? _reaction_damping_factor * react_rate_R
: 0.0;
if (_d.p_V <
0.01 * Adsorption::AdsorptionReaction::getEquilibriumVapourPressure(
_d.T) &&
react_rate_R > 0.0)
{
react_rate_R = 0.0;
}
else if (_d.p_V < 100.0 ||
_d.p_V < 0.05 * Adsorption::AdsorptionReaction::
getEquilibriumVapourPressure(_d.T))
{
// use equilibrium reaction for dry regime
// in the case of zeroth try in zeroth iteration: _p_V and loading are
// the values
// at the end of the previous timestep
const double pV_eq = estimateAdsorptionEquilibrium(_d.p_V, loading);
// TODO [CL]: it would be more correct to subtract pV from the previous
// timestep here
const double delta_pV = pV_eq - _d.p_V;
const double delta_rhoV =
delta_pV * _d.ap.M_react /
MaterialLib::PhysicalConstant::IdealGasConstant / _d.T * _d.ap.poro;
const double delta_rhoSR = delta_rhoV / (_d.ap.poro - 1.0);
double react_rate_R2 = delta_rhoSR / _d.ap.delta_t;
if (_bounds_violation[int_pt])
{
react_rate_R2 *= 0.5;
}
// 0th try: make sure reaction is not slower than allowed by local
// estimation
// nth try: make sure reaction is not made faster by local estimation
if ((_d.ap.number_of_try_of_iteration == 1 &&
std::abs(react_rate_R2) > std::abs(react_rate_R)) ||
(_d.ap.number_of_try_of_iteration > 1 &&
std::abs(react_rate_R2) < std::abs(react_rate_R)))
{
react_rate_R = react_rate_R2;
}
}
// smooth out readjustment of reaction rate
if (_d.ap.iteration_in_current_timestep > 4)
{
if (_d.ap.iteration_in_current_timestep <= 9)
{
// update reaction rate for for five iterations
const auto N = _d.ap.iteration_in_current_timestep - 4;
// take average s.t. does not oscillate so much
react_rate_R = 1.0 / (1.0 + N) *
(N * _d.reaction_rate[int_pt] + 1.0 * react_rate_R);
}
else
{
// afterwards no update anymore
react_rate_R = _d.reaction_rate[int_pt];
}
}
if (_d.ap.number_of_try_of_iteration > 1)
{
// assert that within tries reaction does not get faster
// (e.g. due to switch equilibrium reaction <--> kinetic reaction)
// factor of 0.9*N: in fact, even slow down reaction over tries
const double r = std::pow(0.9, _d.ap.number_of_try_of_iteration - 1) *
_d.reaction_rate[int_pt];
if (std::abs(react_rate_R) > std::abs(r))
{
react_rate_R = r;
}
}
return {react_rate_R,
_d.solid_density_prev_ts[int_pt] + react_rate_R * _d.ap.delta_t};
}
double TESFEMReactionAdaptorAdsorption::estimateAdsorptionEquilibrium(
const double p_V0, const double C0) const
{
auto f = [this, p_V0, C0](double pV) -> double
{
// pV0 := _p_V
const double C_eq =
_d.ap.react_sys->getEquilibriumLoading(pV, _d.T, _d.ap.M_react);
return (pV - p_V0) * _d.ap.M_react /
MaterialLib::PhysicalConstant::IdealGasConstant / _d.T *
_d.ap.poro +
(1.0 - _d.ap.poro) * (C_eq - C0) * _d.ap.rho_SR_dry;
};
// range where to search for roots of f
const double C_eq0 =
_d.ap.react_sys->getEquilibriumLoading(p_V0, _d.T, _d.ap.M_react);
const double limit =
(C_eq0 > C0)
? 1e-8
: Adsorption::AdsorptionReaction::getEquilibriumVapourPressure(
_d.T);
// search for roots
auto rf = MathLib::Nonlinear::makeRegulaFalsi<MathLib::Nonlinear::Pegasus>(
f, p_V0, limit);
rf.step(3);
// set vapour pressure
return rf.getResult();
}
bool TESFEMReactionAdaptorAdsorption::checkBounds(
std::vector<double> const& local_x,
std::vector<double> const& local_x_prev_ts)
{
double alpha = 1.0;
const double min_xmV = 1e-6;
const std::size_t nnodes = local_x.size() / NODAL_DOF;
const std::size_t xmV_offset = COMPONENT_ID_MASS_FRACTION * nnodes;
for (std::size_t i = 0; i < nnodes; ++i)
{
auto const xnew = local_x[xmV_offset + i];
auto const xold = local_x_prev_ts[xmV_offset + i];
if (xnew < min_xmV)
{
const auto a = xold / (xold - xnew);
alpha = std::min(alpha, a);
_bounds_violation[i] = true;
}
else if (xnew > 1.0)
{
const auto a = xold / (xnew - xold);
alpha = std::min(alpha, a);
_bounds_violation[i] = true;
}
else
{
_bounds_violation[i] = false;
}
}
assert(alpha > 0.0);
if (alpha != 1.0)
{
if (alpha > 0.5)
{
alpha = 0.5;
}
if (alpha < 0.05)
{
alpha = 0.05;
}
if (_d.ap.number_of_try_of_iteration <= 3)
{
_reaction_damping_factor *= sqrt(alpha);
}
else
{
_reaction_damping_factor *= alpha;
}
}
return alpha == 1.0;
}
void TESFEMReactionAdaptorAdsorption::preZerothTryAssemble()
{
if (_reaction_damping_factor < 1e-3)
{
_reaction_damping_factor = 1e-3;
}
_reaction_damping_factor = std::min(std::sqrt(_reaction_damping_factor),
10.0 * _reaction_damping_factor);
}
TESFEMReactionAdaptorInert::TESFEMReactionAdaptorInert(
TESLocalAssemblerData const& data)
: _d(data)
{
}
ReactionRate TESFEMReactionAdaptorInert::initReaction(const unsigned int_pt)
{
return {0.0, _d.solid_density_prev_ts[int_pt]};
// _d._qR = 0.0;
// _d._reaction_rate[int_pt] = 0.0;
}
TESFEMReactionAdaptorSinusoidal::TESFEMReactionAdaptorSinusoidal(
TESLocalAssemblerData const& data)
: _d(data)
{
assert(dynamic_cast<Adsorption::ReactionSinusoidal const*>(
data.ap.react_sys.get()) != nullptr &&
"Reactive system has wrong type.");
}
ReactionRate TESFEMReactionAdaptorSinusoidal::initReaction(
const unsigned /*int_pt*/)
{
const double t = _d.ap.current_time;
// Cf. OGS5
const double rhoSR0 = 1.0;
const double rhoTil = 0.1;
const double omega = 2.0 * 3.1416;
const double poro = _d.ap.poro;
return {rhoTil * omega * cos(omega * t) / (1.0 - poro),
rhoSR0 + rhoTil * std::sin(omega * t) / (1.0 - poro)};
}
TESFEMReactionAdaptorCaOH2::TESFEMReactionAdaptorCaOH2(
TESLocalAssemblerData const& data)
: _d(data),
_react(dynamic_cast<Adsorption::ReactionCaOH2&>(*data.ap.react_sys))
{
_ode_solver = MathLib::ODE::createODESolver<1>(_react.getOdeSolverConfig());
// TODO invalidate config
_ode_solver->setTolerance(1e-10, 1e-10);
auto f = [this](const double /*t*/,
MathLib::ODE::MappedConstVector<1> const y,
MathLib::ODE::MappedVector<1>
ydot) -> bool
{
ydot[0] = _react.getReactionRate(y[0]);
return true;
};
_ode_solver->setFunction(f, nullptr);
}
ReactionRate TESFEMReactionAdaptorCaOH2::initReaction(const unsigned int int_pt)
{
// TODO if the first holds, the second also has to hold
if (_d.ap.iteration_in_current_timestep > 1 ||
_d.ap.number_of_try_of_iteration > 1)
{
return {_d.reaction_rate[int_pt], _d.solid_density[int_pt]};
}
// TODO: double check!
// const double xv_NR = SolidProp->non_reactive_solid_volume_fraction;
// const double rho_NR = SolidProp->non_reactive_solid_density;
const double xv_NR = 0.0;
const double rho_NR = 0.0;
const double t0 = 0.0;
const double y0 =
(_d.solid_density_prev_ts[int_pt] - xv_NR * rho_NR) / (1.0 - xv_NR);
const double t_end = _d.ap.delta_t;
_react.updateParam(_d.T, _d.p, _d.vapour_mass_fraction,
_d.solid_density_prev_ts[int_pt]);
_ode_solver->setIC(t0, {y0});
_ode_solver->preSolve();
_ode_solver->solve(t_end);
const double time_reached = _ode_solver->getTime();
(void)time_reached;
assert(std::abs(t_end - time_reached) <
std::numeric_limits<double>::epsilon());
auto const& y_new = _ode_solver->getSolution();
auto const& y_dot_new = _ode_solver->getYDot(t_end, y_new);
double rho_react;
// cut off when limits are reached
if (y_new[0] < ProcessLib::TES::TESFEMReactionAdaptorCaOH2::React::rho_low)
{
rho_react = ProcessLib::TES::TESFEMReactionAdaptorCaOH2::React::rho_low;
}
else if (y_new[0] >
ProcessLib::TES::TESFEMReactionAdaptorCaOH2::React::rho_up)
{
rho_react = ProcessLib::TES::TESFEMReactionAdaptorCaOH2::React::rho_up;
}
else
{
rho_react = y_new[0];
}
return {y_dot_new[0] * (1.0 - xv_NR),
(1.0 - xv_NR) * rho_react + xv_NR * rho_NR};
}
} // namespace TES
} // namespace ProcessLib
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