/*
 * =====================================================================================
 *
 *       Filename:  kmer_query.cc
 *
 *    Description:  
 *
 *        Version:  1.0
 *        Created:  04/27/2016 08:48:26 AM
 *       Revision:  none
 *       Compiler:  gcc
 *
 *         Author:  Prashant Pandey (ppandey@cs.stonybrook.edu)
 *                  Rob Patro (rob.patro@cs.stonybrook.edu)
 *                  Rob Johnson (rob@cs.stonybrook.edu)
 *   Organization:  Stony Brook University
 *
 * =====================================================================================
 */

#include <iostream>
#include <cstring>
#include <vector>
#include <set>
#include <bitset>
#include <cassert>
#include <fstream>

#include <time.h>
#include <stdio.h>
#include <fcntl.h>
#include <unistd.h>
#include <sys/stat.h>
#include <sys/time.h>

#include "threadsafe-gqf/gqf.h"

using namespace std;

/* Print elapsed time using the start and end timeval */
void print_time_elapsed(string desc, struct timeval* start, struct timeval* end) 
{
	struct timeval elapsed;
	if (start->tv_usec > end->tv_usec) {
		end->tv_usec += 1000000;
		end->tv_sec--;
	}
	elapsed.tv_usec = end->tv_usec - start->tv_usec;
	elapsed.tv_sec = end->tv_sec - start->tv_sec;
	float time_elapsed = (elapsed.tv_sec * 1000000 + elapsed.tv_usec)/1000000.f;
	cout << desc << "Total Time Elapsed: " << to_string(time_elapsed) << " seconds" << endl;
}

/*
 * ===  FUNCTION  ======================================================================
 *         Name:  main
 *  Description:  
 * =====================================================================================
 */
int main ( int argc, char *argv[] )
{
	QF cfa, cfb;
	string ds_filea = argv[1];
	string ds_fileb = argv[2];
	uint64_t inner_prod;
	struct timeval start, end;
	struct timezone tzp;

	srand(time(NULL));

	//Initialize the QF
	cout << "Mmap the QF from disk" << endl;
	qf_read(&cfa, ds_filea.c_str());
	qf_read(&cfb, ds_fileb.c_str());

	cout << "Performing inner product querries." << endl;

	gettimeofday(&start, &tzp);
	inner_prod = qf_inner_product(&cfa, &cfb);
	gettimeofday(&end, &tzp);
	cout << "Inner product: " << inner_prod << "\n" << endl;
	print_time_elapsed("", &start, &end);
	
	return EXIT_SUCCESS;
}				/* ----------  end of function main  ---------- */