Skip to main content
  • Home
  • Development
  • Documentation
  • Donate
  • Operational login
  • Browse the archive

swh logo
SoftwareHeritage
Software
Heritage
Archive
Features
  • Search

  • Downloads

  • Save code now

  • Add forge now

  • Help

Revision 8cfb272518a47a1ea20715e6c0e5182632e7b591 authored by Loic Gouarin on 21 May 2024, 17:47:31 UTC, committed by GitHub on 21 May 2024, 17:47:31 UTC
Create AUTHORS.txt
1 parent e70821d
  • Files
  • Changes
  • 5a15d3b
  • /
  • GenEO
  • /
  • bc.py
Raw File Download

To reference or cite the objects present in the Software Heritage archive, permalinks based on SoftWare Hash IDentifiers (SWHIDs) must be used.
Select below a type of object currently browsed in order to display its associated SWHID and permalink.

  • revision
  • directory
  • content
revision badge
swh:1:rev:8cfb272518a47a1ea20715e6c0e5182632e7b591
directory badge
swh:1:dir:b3e5cfb741cf18629059987b9348a692987ffaf5
content badge
swh:1:cnt:7a971758e3490b08b3df50a74e8e2abeea72307e

This interface enables to generate software citations, provided that the root directory of browsed objects contains a citation.cff or codemeta.json file.
Select below a type of object currently browsed in order to generate citations for them.

  • revision
  • directory
  • content
Generate software citation in BibTex format (requires biblatex-software package)
Generating citation ...
Generate software citation in BibTex format (requires biblatex-software package)
Generating citation ...
Generate software citation in BibTex format (requires biblatex-software package)
Generating citation ...
bc.py
# Authors:
#     Loic Gouarin <loic.gouarin@cmap.polytechnique.fr>
#     Nicole Spillane <nicole.spillane@cmap.polytechnique.fr>
#
# License: BSD 3 clause
from __future__ import print_function, division
import numpy as np
from six.moves import range

def bcApplyWest_vec(da, B):
    b = da.getVecArray(B)
    ranges = da.getRanges()
    dim = len(ranges)
    xs = ranges[0][0]
    if xs == 0:
        for i in range(dim):
            b[xs, ..., i] = 0

    # mx, my = da.getSizes()
    # (xs, xe), (ys, ye) = da.getRanges()
    # if xs == 0:
    #     for i in range(ys, ye):
    #         b[xs, i, 0] = 0
    #         b[xs, i, 1] = 0

def bcApplyWestMat(da, A):
    """
    Apply boundary conditions on the west side.

    Parameters
    ==========

    da : petsc.DMDA
        The mesh structure.
    
    A : petsc.Mat
        The matrix of the elasticity operator.

    b : petsc.Vec
        The second member.
    
    This function sets all the row entries of the matrix A 
    corresponding to the Dirichlet boundary to 0 and 1 on 
    the diagonal and sets the Dirichlet condition on the 
    second member b.

    """
    dim = da.getDim()
    dof = da.getDof()
    ranges = da.getGhostRanges()
    sizes = np.empty(dim, dtype=np.int32)
    for ir, r in enumerate(ranges):
        sizes[ir] = r[1] - r[0]

    rows = np.empty(0, dtype=np.int32)
    values = np.empty(0)

    if ranges[0][0] == 0:
        if dim == 2:
            rows = np.empty(dim*sizes[1], dtype=np.int32)
            rows[::dof] = dof*np.arange(sizes[1])*sizes[0]
        else:
            rows = np.empty(dim*sizes[1]*sizes[2], dtype=np.int32)
            y = np.arange(sizes[1])
            z = np.arange(sizes[2])*sizes[1]
            rows[::dof] = dof*sizes[0]*(y + z[:, np.newaxis]).flatten()
        for i in range(1, dof):
            rows[i::dof] = rows[::dof] + i

    # A.zeroRowsColumnsLocal(rows)
    A.zeroRowsLocal(rows)

def bcApplyWest(da, A, B):
    """
    Apply boundary conditions on the west side.

    Parameters
    ==========

    da : petsc.DMDA
        The mesh structure.
    
    A : petsc.Mat
        The matrix of the elasticity operator.

    b : petsc.Vec
        The second member.
    
    This function sets all the row entries of the matrix A 
    corresponding to the Dirichlet boundary to 0 and 1 on 
    the diagonal and sets the Dirichlet condition on the 
    second member b.

    """
    dim = da.getDim()
    dof = da.getDof()
    ranges = da.getRanges()
    ghost_ranges = da.getGhostRanges()

    sizes = np.empty(dim, dtype=np.int32)
    ir = 0
    for r , gr in zip(ranges, ghost_ranges):
        sizes[ir] = r[1] - gr[0]
        ir += 1

    rows = np.empty(0, dtype=np.int32)
    values = np.empty(0)

    if ranges[0][0] == 0:
        if dim == 2:
            rows = np.empty(dim*sizes[1], dtype=np.int32)
            rows[::dof] = dof*np.arange(sizes[1])*sizes[0]
        else:
            rows = np.empty(dim*sizes[1]*sizes[2], dtype=np.int32)
            y = np.arange(sizes[1])
            z = np.arange(sizes[2])*sizes[1]
            rows[::dof] = dof*sizes[0]*(y + z[:, np.newaxis]).flatten()
        for i in range(1, dof):
            rows[i::dof] = rows[::dof] + i

    A.zeroRowsColumns(rows)

    b = da.getVecArray(B)
    ranges = da.getRanges()
    xs = ranges[0][0]
    if  xs == 0:
        for i in range(dim):
            b[xs, ..., i] = 0

def bcApplyEast(da, A, B):
    """
    Apply boundary conditions on the east side.

    Parameters
    ==========

    da : petsc.DMDA
        The mesh structure.
    
    A : petsc.Mat
        The matrix of the elasticity operator.

    b : petsc.Vec
        The second member.
    
    This function sets all the row entries of the matrix A 
    corresponding to the Dirichlet boundary to 0 and 1 on 
    the diagonal and sets the Dirichlet condition on the 
    second member b.

    """
    global_sizes = da.getSizes()
    dof = da.getDof()
    ranges = da.getGhostRanges()
    sizes = np.empty(2, dtype=np.int32)
    for ir, r in enumerate(ranges):
        sizes[ir] = r[1] - r[0]

    rows = np.empty(0, dtype=np.int32)
    values = np.empty(0)

    if ranges[0][1] == global_sizes[0]:
        rows = np.empty(2*sizes[1], dtype=np.int32)
        rows[::2] = dof*(np.arange(sizes[1])*sizes[0]+ sizes[0]-1)
        rows[1::2] = rows[::2] + 1
        values = np.zeros(2*sizes[1])
        values[::2] = 1.
        values[1::2] = -1.

    A.zeroRowsLocal(rows)

    mx, my = da.getSizes()
    (xs, xe), (ys, ye) = da.getRanges()
    b = da.getVecArray(B)
    if xe == mx:
        for i in range(ys, ye):
            b[xe-1, i, 0] = 0
            b[xe-1, i, 1] = 0
The diff you're trying to view is too large. Only the first 1000 changed files have been loaded.
Showing with 0 additions and 0 deletions (0 / 0 diffs computed)
swh spinner

Computing file changes ...

back to top

Software Heritage — Copyright (C) 2015–2026, The Software Heritage developers. License: GNU AGPLv3+.
The source code of Software Heritage itself is available on our development forge.
The source code files archived by Software Heritage are available under their own copyright and licenses.
Terms of use: Archive access, API— Content policy— Contact— JavaScript license information— Web API