Revision 8e8eeab24ebe6aa0b0f68a9ca3379eee4249fdfe authored by Kevin Sheppard on 19 October 2015, 21:58:33 UTC, committed by Kevin Sheppard on 19 October 2015, 21:58:33 UTC
TST: Add tests for exact ties in MCS
setup.py
from __future__ import print_function
import glob
import os
import pkg_resources
import subprocess
import sys
import re
from distutils.version import StrictVersion
from setuptools import setup, Extension, find_packages, Command
from setuptools.dist import Distribution
from Cython.Distutils.build_ext import build_ext as _build_ext
CMDCLASS = {}
# prevent setup.py from crashing by calling import numpy before
# numpy is installed
class build_ext(_build_ext):
def build_extensions(self):
numpy_incl = pkg_resources.resource_filename('numpy', 'core/include')
for ext in self.extensions:
if (hasattr(ext, 'include_dirs') and
not numpy_incl in ext.include_dirs):
ext.include_dirs.append(numpy_incl)
_build_ext.build_extensions(self)
CMDCLASS['build_ext'] = build_ext
SETUP_REQUIREMENTS = {'numpy': '1.7'}
REQUIREMENTS = {'Cython': '0.20',
'matplotlib': '1.2',
'scipy': '0.12',
'pandas': '0.12',
'statsmodels': '0.5',
'patsy': '0.2'}
ALL_REQUIREMENTS = SETUP_REQUIREMENTS.copy()
ALL_REQUIREMENTS.update(REQUIREMENTS)
ext_modules = []
if not '--no-binary' in sys.argv:
ext_modules.append(Extension("arch.univariate.recursions",
["./arch/univariate/recursions.pyx"]))
ext_modules.append(Extension("arch.bootstrap._samplers",
["./arch/bootstrap/_samplers.pyx"]))
else:
del REQUIREMENTS['Cython']
sys.argv.remove('--no-binary')
class BinaryDistribution(Distribution):
def is_pure(self):
return False
class CleanCommand(Command):
"""Custom distutils command to clean the .so and .pyc files."""
user_options = [("all", "a", "")]
def initialize_options(self):
self.all = True
self._clean_files = []
self._clean_trees = []
for root, dirs, files in list(os.walk('arch')):
for f in files:
if os.path.splitext(f)[-1] == '.pyx':
search = os.path.join(root, os.path.splitext(f)[0] + '.*')
candidates = glob.glob(search)
for c in candidates:
if os.path.splitext(c)[-1] in ('.pyc', '.c', '.so',
'.pyd', '.dll'):
self._clean_files.append(c)
for d in ('build',):
if os.path.exists(d):
self._clean_trees.append(d)
def finalize_options(self):
pass
def run(self):
for f in self._clean_files:
try:
os.unlink(f)
except Exception:
pass
for clean_tree in self._clean_trees:
try:
import shutil
shutil.rmtree(clean_tree)
except Exception:
pass
CMDCLASS['clean'] = CleanCommand
def strip_rc(version):
return re.sub(r"rc\d+$", "", version)
# Polite checks for numpy, scipy and pandas. These should not be upgraded,
# and if found and below the required version, refuse to install
missing_package = '{package} is installed, but the version installed' \
', {existing_ver}, is less than the required version ' \
'of {required_version}. This package must be manually ' \
'updated. If this isn\'t possible, consider installing in ' \
'an empty virtual environment.'
PACKAGE_CHECKS = ['numpy', 'scipy', 'pandas']
for key in PACKAGE_CHECKS:
version = None
satisfies_req = True
existing_version = 'Too Old to Detect'
if key == 'numpy':
try:
import numpy
try:
from numpy.version import short_version as version
except ImportError:
satisfies_req = False
except ImportError:
pass
elif key == 'scipy':
try:
import scipy
try:
from scipy.version import short_version as version
except ImportError:
satisfies_req = False
except ImportError:
pass
elif key == 'pandas':
try:
from pandas.version import short_version as version
except ImportError:
pass
except: # very old version
satisfies_req = False
else:
raise NotImplementedError('Unknown package')
if version:
existing_version = StrictVersion(strip_rc(version))
satisfies_req = existing_version >= ALL_REQUIREMENTS[key]
if not satisfies_req:
message = missing_package.format(package=key,
existing_ver=existing_version,
required_version=ALL_REQUIREMENTS[key])
raise EnvironmentError(message)
cwd = os.getcwd()
# Convert markdown to rst for submission
long_description = ''
try:
cmd = 'pandoc --from=markdown --to=rst --output=README.rst README.md'
proc = subprocess.Popen(cmd, shell=True)
proc.wait()
long_description = open(os.path.join(cwd, "README.rst")).read()
except IOError as e:
import warnings
warnings.warn('Unable to convert README.md. Most likely because pandoc is '
'not installed')
# Convert examples notebook to rst for docs
try:
from IPython.nbconvert.utils.exceptions import ConversionException
from IPython.nbconvert.utils.pandoc import PandocMissing
except ImportError as e:
ConversionException = PandocMissing = ValueError
try:
import IPython.nbformat as nbformat
from IPython.nbconvert import RSTExporter
notebooks = glob.glob(os.path.join(cwd, 'examples', '*.ipynb'))
for notebook in notebooks:
try:
f = open(notebook, 'rt')
example_nb = f.read()
f.close()
rst_path = os.path.join(cwd, 'doc', 'source')
path_parts = os.path.split(notebook)
nb_filename = path_parts[-1]
nb_filename = nb_filename.split('.')[0]
source_dir = nb_filename.split('_')[0]
rst_filename = os.path.join(cwd, 'doc', 'source',
source_dir, nb_filename + '.rst')
example_nb = nbformat.reader.reads(example_nb)
rst_export = RSTExporter()
(body, resources) = rst_export.from_notebook_node(example_nb)
with open(rst_filename, 'wt') as rst:
rst.write(body)
for key in resources['outputs'].keys():
if key.endswith('.png'):
resource_filename = os.path.join(cwd, 'doc', 'source',
source_dir, key)
with open(resource_filename, 'wb') as resource:
resource.write(resources['outputs'][key])
except:
import warnings
warnings.warn('Unable to convert {original} to {target}. This '
'only affects documentation generation and not the '
'operation of the '
'module.'.format(original=notebook,
target=rst_filename))
print('The last error was:')
import sys
print(sys.exc_info()[0])
print(sys.exc_info()[1])
except:
import warnings
warnings.warn('Unable to import required modules from IPython. This only '
'affects documentation generation and not the operation of '
'the module.')
print('The last error was:')
import sys
print(sys.exc_info()[0])
print(sys.exc_info()[1])
# Read version information from plain VERSION file
version = None
try:
version_file = open(os.path.join(cwd, 'VERSION'), 'rt')
version = version_file.read().strip()
version_file.close()
version_py_file = open(os.path.join(cwd, 'arch', '_version.py'), mode='wt')
version_py_file.write('__version__="' + version + '"')
version_py_file.close()
except:
raise EnvironmentError('Cannot locate VERSION')
setup(name='arch',
license='NCSA',
version=version,
description='ARCH for Python',
long_description=long_description,
author='Kevin Sheppard',
author_email='kevin.sheppard@economics.ox.ac.uk',
url='http://github.com/bashtage/arch',
packages=find_packages(),
ext_modules=ext_modules,
package_dir={'arch': './arch'},
cmdclass={'build_ext': build_ext, 'clean': CleanCommand},
keywords=['arch', 'ARCH', 'variance', 'econometrics', 'volatility',
'finance', 'GARCH', 'bootstrap', 'random walk', 'unit root',
'Dickey Fuller', 'time series', 'confidence intervals',
'multiple comparisons', 'Reality Check', 'SPA', 'StepM'],
zip_safe=False,
include_package_data=True,
distclass=BinaryDistribution,
classifiers=[
'Development Status :: 4 - Beta',
'Intended Audience :: End Users/Desktop',
'Intended Audience :: Financial and Insurance Industry',
'Programming Language :: Python :: 2.7',
'Programming Language :: Python :: 3.3',
'Programming Language :: Python :: 3.4',
'License :: OSI Approved',
'Operating System :: MacOS :: MacOS X',
'Operating System :: Microsoft :: Windows',
'Operating System :: POSIX',
'Programming Language :: Python',
'Programming Language :: Cython',
'Topic :: Scientific/Engineering',
],
install_requires=[key + '>=' + REQUIREMENTS[key] for key in REQUIREMENTS],
setup_requires=[key + '>=' + SETUP_REQUIREMENTS[key] for key in SETUP_REQUIREMENTS],
)
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