https://github.com/sanger-pathogens/gubbins
Revision 9482d25288232436ba146b48364ac6418341e485 authored by andrewjpage on 07 April 2015, 10:19:48 UTC, committed by andrewjpage on 07 April 2015, 10:19:48 UTC
1 parent b99bd75
Tip revision: 9482d25288232436ba146b48364ac6418341e485 authored by andrewjpage on 07 April 2015, 10:19:48 UTC
order of indices depends on order of blocks
order of indices depends on order of blocks
Tip revision: 9482d25
ChangeLog
2012-11-2 Andrew J. Page <ap13@sanger.ac.uk>
* Prefilters the initial alignment, ignoring sequences with >25% missing data (the '--filter_percentage' parameter lets you vary this).
* SNPs are outputted on a per branch basis in tab format.
* The stats are now on a per branch basis rather than cumulatively built up from walking the tree.
* Node labelling in the recombination tab file now consistent with the tree internal node labels
2012-8-7 Andrew J. Page <ap13@sanger.ac.uk>
* Cleanup intermediate files by default
* Fix RF distance calculation and comparison
2012-4-24 Andrew J. Page <ap13@sanger.ac.uk>
* Initial beta testing version
Computing file changes ...
