https://github.com/sanger-pathogens/gubbins
- HEAD
- refs/heads/149_no_filter_dups
- refs/heads/JAR
- refs/heads/alignment_updating
- refs/heads/c_mem
- refs/heads/conda_patch
- refs/heads/fix_installation
- refs/heads/fix_tests
- refs/heads/fixdocker
- refs/heads/gh-pages
- refs/heads/hpc_fix
- refs/heads/improve_scripts
- refs/heads/improve_testing
- refs/heads/jdaeth274-josh_merging_branch
- refs/heads/masking_aln
- refs/heads/master
- refs/heads/new_ska2
- refs/heads/numpyjar
- refs/heads/raxml_reconstruction
- refs/heads/rec_per_gene
- refs/heads/star_fix
- refs/heads/time_tree
- refs/heads/update_rec
- refs/tags/0.1.10
- refs/tags/0.1.11
- refs/tags/0.1.6
- refs/tags/0.1.7
- refs/tags/0.1.8
- refs/tags/0.1.9
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- refs/tags/v0.4.1
- refs/tags/v0.5
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- refs/tags/v1.0.10
- refs/tags/v1.0.11
- refs/tags/v1.0.12
- refs/tags/v1.0.2
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- refs/tags/v1.0.7
- refs/tags/v1.0.8
- refs/tags/v1.0.9
- refs/tags/v1.1.0
- refs/tags/v1.1.1
- refs/tags/v1.1.2
- refs/tags/v1.2.0
- refs/tags/v1.2.1
- refs/tags/v1.2.2
- refs/tags/v1.2.3
- refs/tags/v1.2.4
- refs/tags/v1.3.0
- refs/tags/v1.3.1
- refs/tags/v1.3.3
- refs/tags/v1.3.4
- refs/tags/v1.4.0
- refs/tags/v1.4.1
- refs/tags/v1.4.10
- refs/tags/v1.4.2
- refs/tags/v1.4.3
- refs/tags/v1.4.4
- refs/tags/v1.4.5
- refs/tags/v1.4.6
- refs/tags/v1.4.7
- refs/tags/v1.4.8
- refs/tags/v1.4.9
- refs/tags/v2.0.0
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- refs/tags/v2.2.1
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- refs/tags/v2.4.0
- refs/tags/v2.4.0-docker2
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- refs/tags/v3.0.0
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- refs/tags/v3.3.0
- refs/tags/v3.3.1
- refs/tags/v3.3.3
- refs/tags/v3.3.4
- 9482d25288232436ba146b48364ac6418341e485
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