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Revision Author Date Message Commit Date
94d00b8 Add time offset to faithsim (#1094) 22 September 2016, 14:14:24 UTC
64c1ed1 do not require pylal for pycbc library (#865) * don't require pylal * hide legacy grb pylal import 22 September 2016, 12:39:41 UTC
ebc769b use the code cache directory for the code cache file lock (#1093) * use the code cache directory for the code cache file lock * woops * cleanup 22 September 2016, 12:36:18 UTC
126c38b Add a patch to get rid of curl error flag. (#1092) 21 September 2016, 16:14:48 UTC
a86b00a added binned fit plotting code specialized to hdf files (#1091) 21 September 2016, 12:58:08 UTC
1140ae6 check for number 19 September 2016, 15:27:29 UTC
71fc858 add phase statistic file 19 September 2016, 11:48:02 UTC
e17781e update workflow to handle file urls 19 September 2016, 11:47:26 UTC
1457b0e Fix the issues with the install script so that it works with the current code base (#1068) * comment out rom check as the checksums are incorrect * fixed lalapps build * disable the parts of lalapps that can cause build failures * fixed rom checksums * removed hdf5 lib install needed for centos 5 * move rom checks to after r7 is downloaded * put lal extra data in src directory * force a link of lalapps against zlib * when building dev install glue and pylal from github 18 September 2016, 00:40:38 UTC
5778e26 Amplitudes ringdown as relative amplitudes (#1072) * Amplitudes of subdominant modes as fraction of fundamental mode * Correct typo * Adapt example in generator function to new amplitudes * Changes to allow the ringdown injection to work as it is * Adapt help in pycbc_ringinj to recent changes * Write amp220 into ringdown injection file even if mode 22 not selected 16 September 2016, 18:24:14 UTC
6ca2d33 Support more LALSimulation PSDs, including sampled ones (#1067) This patch provides access to a wider range of LALSimulation PSDs, including, for example, XLALSimNoisePSDaLIGOLateHighSensitivityP1200087. 16 September 2016, 17:00:03 UTC
248c305 add option to subtract template at trigger time (#1084) * add option to subtract template at trigger time * fix 16 September 2016, 13:59:22 UTC
a2c2645 Add extra option to pycbc_submit_dax to use relative paths for regular files. (#1082) * Add extra option to use relative paths for regular files. * Add a helpful comment to user to get rid of possible confusion when appending files with relative paths. 15 September 2016, 13:08:02 UTC
67a37db Fix segfile and taper errors (#1087) * Fix error in SegFile when seg_summ_dict is a dict of empty lists * Fix error in error message 15 September 2016, 07:58:27 UTC
66c06a7 Bump Travis lalsuite to include Leo's swig PSD fixes (#1088) 15 September 2016, 06:54:41 UTC
163cca6 Add single-detector minifollowups for non-coincidence time only (#1086) * Add non-coinc times minifollowups * More MFUP changes * Edits to pycbc_sngl_minifollowup to make fix * Finalizing single-det mini-followups 14 September 2016, 18:15:03 UTC
a4055d0 Add unit test for likelihood evaluator (#1077) * Add unittest * Add test to travis script. * Do not use ROM in test. * Fix approximant. 14 September 2016, 08:54:59 UTC
c2493e4 fix critical bug which scrambles template ids (#1078) * working to fix merge trigs * unify template hash into TemplateBank class * fix some stuff * fix template sort order 13 September 2016, 09:50:50 UTC
ab470b6 remove old example ini files (#1075) 12 September 2016, 14:05:23 UTC
148b626 Time domain waveforms should not be complex (#1079) 12 September 2016, 13:58:20 UTC
8d11ea0 Split prior module into prior evaulator module and distributions module. (#1076) * Split prior module into prior evaulator module and distributions module. * Use ValueError. * Landscaping. 12 September 2016, 11:27:00 UTC
8b2f259 support template bank filename extension '.xmlgz' (#1071) - the file handling of Condor-BOINC only preserves one filename extension 'level' 08 September 2016, 14:45:20 UTC
48102c4 Add emcee's parallel tempered sampler (#1059) * add pt sampler to sampler.py * add temps to options, inference file * various fixes to allow the pt sampler to run * moved snr to its own function and have it return 0 instead of complex * change logging message about evidence * fix bugs caught by quantified code * have read_fields load the coldest temperature chain by default * fix initial blob issues with kombine 06 September 2016, 17:56:38 UTC
d2600ee Set back to 1.6.dev0 (#1065) 01 September 2016, 00:07:19 UTC
8189674 Update example config file for uberbank workflow (#1040) * Update example config file for uberbank workflow Configuration tuned for a bank equivalent to the O1 uberbank. * Ian's suggestions * Reverts after discussion with Ian 31 August 2016, 14:49:21 UTC
8322e59 fit_over_param: optimize numpy array sum (#1061) 31 August 2016, 12:49:38 UTC
b108525 Set for v1.5.3 release (#1064) 31 August 2016, 11:49:52 UTC
b435867 Updated with the executables that are required and those which cant be built at the moment (#1063) 30 August 2016, 23:14:29 UTC
0693ee2 Set to back to development version (#1062) 30 August 2016, 19:19:56 UTC
1adfa8b Set to version 1.5.2 (#1060) 30 August 2016, 11:33:24 UTC
4fea549 Save log likelihood ratio and prior to inference file (#1058) * have likelihood eval return prior, loglr and save it to result file * change "metadata" to "stats"; provide separate function for loading stats 29 August 2016, 15:51:29 UTC
0526628 Two fixes to PSD estimation workflow (#1052) * PSD workflow: configurable max segments per job * PSD workflow: fix incorrect segmentation * PSD workflow: fix and simplify segmentation * PSD estimation docs: add missing merge_psds section 29 August 2016, 13:50:52 UTC
8cf6f6a More updates to sampler.py (#1056) * move more functions over to sampler reorganize indexing add metadata from likelihood evaluator and waveform generator add ability to specify minimum burnin * fix how static args attributes saved and add method to retrieve 29 August 2016, 12:56:36 UTC
ea38278 Allow pycbc_submit_dax to use more than a single cache file (#1057) * Add the feature to put multiple cache and map files together into one cache file without user input. Fails if one of the cache files is malformed or does not exist. * Add a patch for when the sqlite fails to query the Pegasus database properly. Let it do a few retries instead of just failing 26 August 2016, 19:53:47 UTC
176438d Changes to prevent the process of building bundles from failing,added option in install script to delete an existing virtual environment location (#1042) * Added option in install script to delete an existing virtual environment location with same name as the one being installed * Import hidden-dependancies for ligolw executables, added option to continue making bundles * Reduced requested memory,changed universe to local,added retry for jobs,deleted lines to build ligolw bundles through the dag 26 August 2016, 17:58:52 UTC
ef2c633 Remove gatefiles.py and simplify supplied gating files (#1044) * Remove gatefiles.py and simplify supplied gating files * Support gating files also in single_template * Do my bit for code quality 26 August 2016, 16:07:26 UTC
5ee942e Reorganize read/write samples (#1053) * move sampler read/write functions to the individual sampler classes * add iteration argument to parser options * fix bug in writing acf, default to niterations for thin end * fix bugs caught by landscape 26 August 2016, 00:00:57 UTC
2d7dac7 Limit memory footprint of plot_psd_file (#1055) 25 August 2016, 18:41:49 UTC
44c02da Fitting workflow (#1026) * setup.py : add fitting scripts, neaten order * trig fitting in workflow: main commit * make_coinc_search_workflow: whitespace * add sklearn to dependencies * remove some unused imports from coinc.py and a couple of smells * now remove scikit-learn dependency, allow fitting with alternative smoothing function * fit by template: fix bug in parsing veto segment name * attempt to make landscape happier 25 August 2016, 08:35:13 UTC
5bcb894 Add plot throughput in coinc workflow (#1054) * Add ability to record inspiral throughput in EventManager * Record information needed for throughput plotting in pycbc_inspiral * Modify mergetrigs to propagate throughput numbers when present * Add function to workflow.plotting to plot throughput * Add executable to plot throughput * Make setup.py aware of throughput plotting executable * Support throughput plotting in coinc workflows * Revert unintended change to spa_tmplt.py * Change default tags argument to make_throughput_plot 24 August 2016, 21:43:43 UTC
6f9df1a Fix index issue with pycbc_page_injtable (#1049) 24 August 2016, 16:29:59 UTC
47d6690 clarify terms used by likelihood generators, and have GaussianLikelihood return prior-weighted likelihood ratio by default (#1047) 24 August 2016, 15:14:07 UTC
f9e7671 Compat change for Python 2.6 (and add a docstring too) (#1048) 23 August 2016, 19:26:00 UTC
41d3b7f add sort method to field array (#1045) 23 August 2016, 15:36:50 UTC
eccf927 Pegasus Replica Selector URL to URI (#1039) * Addressing open issue #874, Pegasus replica selector should just select by URI not URL. This should tell pegasus to try using these different URI's rather than a very particular URL. * Add CVMFS to list. 23 August 2016, 13:06:38 UTC
7a644e8 Update An* lattice code for recent lalpulsar (#1037) 22 August 2016, 20:14:13 UTC
d916ffd don't require bank to be in hash sorted order (#1041) * don't require bank to be in hash sorted order * fix typo 22 August 2016, 16:53:21 UTC
dc577c8 Change URL so that the OSG workflows can copy files properly. (#1036) * Change URL so that the OSG workflows can copy files properly. * Edits to pycbc_submit_dax to make sure you can run locally on non-OSG and on OSG 22 August 2016, 15:49:56 UTC
288e321 fix bug introduced in PR#1032 (#1038) 22 August 2016, 14:54:18 UTC
8cc0bc2 Add emcee as a possible sampler to pycbc inference (#1034) * add emcee as a possible sampler to pycbc inference * transpose emcee chain to be consistent with kombine... also, BOW BEFORE LANDSCAPE * add temporary fix for differing definitions of acceptance fraction * fix how positions saved and updated 22 August 2016, 14:45:46 UTC
113a278 Fix & enable unit tests for injection and frame (#1035) 19 August 2016, 20:53:27 UTC
1d8fb91 Update bank2hdf, compress bank to use new write hdf function (#1032) * have bank2hdf use TemplateBank read/write functions * fix some typos * fix a bug when loading specific columns from ligolw table * fix some bugs * fix line overflow * use TemplateBank's write_hdf function * add template hashing back * have write_to_hdf return file handler * fig bugs in compress_bank 19 August 2016, 17:21:54 UTC
336f638 Fix noninteger sizing/indexing (#776) (#1033) * Fix noninteger sizing/indexing (#776) * Sorry landscape, I promise to use all my imports! 19 August 2016, 14:40:13 UTC
010e040 Change TemplateBank's approximant parsing, save approximants to file, and add support for compressed waveforms. (#1023) * add parse_boolargs method to FieldArray * try to perserve order of given names in WaveformArray * switch to WaveformArray in TemplateBank; change how approximant string parsed and approximants stored * function to add standard approximant parser arg * switch to new approximant parsing in pycbc_inspiral * switch to new approximant parsing in compress_bank * switch to new approximant parsing in multi_inspiral, inspiral_skymax * make parse approximant arg a separate function * add from_kwargs method to FieldArray * fix bug in getting virtual field names * update pycbc_plot_waveform for new approximant arg * allow for custom help messages in approximant arg; add to pycbc_plot_waveform * update plot_singles_timefreq for new approximant parsing * updated pycbc_single_template * propagate load_compress options to sub-classes of TemplateBank * import compressed waveforms * allow for backward compatability * don't load template_duration if it is not specified in the list of parameters * fix typo * allow a default to be specified for approximant and use in plot timefreq * move add template_duration to FilterBanks; add option to skip fields when writing hdf file * have plot timefreq default to using the approximant in the bank file 18 August 2016, 16:06:15 UTC
b4a6c80 expose indoc within injection set 18 August 2016, 14:09:35 UTC
5d101cb Function in inference_hdf to read ln(likelihood) from inference results files. (#1031) * Function to read ln(likelihood) from inference results files. * Minor changes in doc * Fix bug 17 August 2016, 13:48:47 UTC
237cbc8 fix end times invocation 17 August 2016, 09:25:36 UTC
2cff2ce make seeds more explicit 17 August 2016, 09:17:22 UTC
e5457d9 swap amp ratio 17 August 2016, 09:17:22 UTC
44a73c9 swap snrs 17 August 2016, 09:17:22 UTC
7fa6809 Change name of parameters Mfinal and Sfinal in ringdown (#1030) * Change name of parameters in ringdown * Choose more descriptive names for parameter in ringdown * Fix typo 16 August 2016, 15:45:35 UTC
55344a6 added PyInstaller runtime-hook to crate tcl&tk directories for tkinter (#1027) 16 August 2016, 09:31:55 UTC
5219132 fix end times invocation (#1029) 16 August 2016, 09:29:43 UTC
b01eb14 added reference to CBC companion for uberbank (#1028) 15 August 2016, 23:54:18 UTC
56f63e9 Write ln(likelihood) in inference result files (#1024) * Write ln(likelihood) in inference results hdf file. * Add missed write function and correct typo * Correct typos * Add nwalkers to write_lnpost 15 August 2016, 07:29:36 UTC
2706969 fix the injection thinning (#1022) 12 August 2016, 15:38:08 UTC
cf132d0 adding expfit stat and dictionarizing choice of statistic (#1021) * adding expfit stat and dictionarizing choice of statistic * stat module: adding back trivial string lookup function * whitespace 12 August 2016, 08:53:59 UTC
0576977 Script to create ringdown injections (#1005) * First steps of script for ringdown injections * Finished script for creating ringdown injections * Remove delta_t and delta_f from the injection code * Add class in inject.py for ringdown injection * Add option ringdown-injection-file for ringdown-only injections. * Implement comments and fix bug * Fix bug (somehow didn't make it into last commit) * Correct different name for declination * Add pycbc_ringinj to setup.py * Adapt changes to last update in strain.py * Correct left conflicts from rebasing * Follow some of landscape instructions * Remove distance from pycbc_ringinj * Fix bug: write amp and phi for single mode approximants * Remove default values for amp and phi * Remove all distance scale factors for ringdown injections * Remove distance_scale from doc string 11 August 2016, 19:04:20 UTC
f26702b Add seed to inference and catch blob (#1020) * add catch if kombine returns blob * add seed to inference * remove leftover print statement * add whitespace back 11 August 2016, 14:17:52 UTC
4fb6976 bank cleanup (#1012) * bank changes bank fixes * more formatting fixes * add more documentation 09 August 2016, 17:15:23 UTC
9ec7d02 xml cleanup (#1014) * remove pycbc inspiral xml output * landscape fixes 09 August 2016, 17:14:41 UTC
b27ad7f update strain conditioning (#1013) * update strain conditioning * update docs 09 August 2016, 17:14:13 UTC
f828454 Fitting exec (#1019) * added executables to perform background fits * fit_sngls_by_template: small fix to argparsing 09 August 2016, 16:37:44 UTC
181a4af Allow compression to use single precision and speed up decompression code (#1009) * speed up the decompress c code * fix some bugs * fixed another bug * rename precision to tolerance * allow compress bank to use single precision * speed up precision checking * simplify and speed up linear decompression code * changed update interval to 128 * fix bug in clearing output array * remove double import of Array * please the landscape gods 09 August 2016, 16:34:53 UTC
62b8f03 Force the thin interval to be an integer (#1017) * Fix bug * Add numpy.ceil() 09 August 2016, 16:09:18 UTC
d67bf81 Import corner after pyplot (#1018) 09 August 2016, 14:11:40 UTC
42ed55d events: add trigger_fits module (#1011) * events: add trigger_fits module * fix bug in std despatch dict 09 August 2016, 12:36:12 UTC
6f51bed Workround for locking problem with PyInstaller (directory) bundles (#1015) 09 August 2016, 09:04:17 UTC
19ffd2f Remove sngl workflow (#1008) * Update inference workflow example for GW150914. * Change PSD interval. * Remove sngl workflow. * Remove executables from setup. 08 August 2016, 14:47:43 UTC
0ea607a Add CompressedWaveform class (#998) * add compressed waveform class * add documentation 08 August 2016, 14:47:24 UTC
1776397 Threshold for template bank filtering (#990) * Threshold for template bank filtering * Threshold for template filtering * Threshold for template bank filtering * use built in injections attribute * remove extra argument * fix use with filter_inj_only * fix some tabs * more fixes 08 August 2016, 14:47:04 UTC
93fe7dd Fix a couple errors and add more scripts to Travis tests (#1006) * Fix error in is_outside_range() * Put more scripts under travis tests * pycbc_coinc_time: fix import error 04 August 2016, 08:27:30 UTC
2af38fd updated matched filter class (#1002) * update matchedfilter class * add some additional documentation * minor cleanup * more fixes * test of landscape... 04 August 2016, 01:43:58 UTC
2cb1b5c update the online frame freading class (#1001) * update frame reading * fiddle with documenation 04 August 2016, 01:19:40 UTC
fdbc576 More tmpltbank workflow changes (#1004) * Add more modularity onto Executable.init * Fewer executables in sbank_workflow * Adding file options for support geom jobs * Fix landscape issues 03 August 2016, 13:58:19 UTC
a25a0e2 move statistic classes from pycbc_coinc_findtrigs into the library (#997) * add stat classes * move the stat classes to their own file * add some more documentation * add more documentation * landscape actually ran... so try to make it like this * address a few more landscape issues * fix a few more things... 02 August 2016, 07:49:55 UTC
3b7a192 Logging (#996) * allow format options to pycbc init logging * minor fixes 30 July 2016, 13:47:49 UTC
c1f6e5d Add bank compression executable (#995) * add spa compression; make mchirp calling, return more similar * fix bug in FilterBank that ignores dtype * add pycbc_compress_bank * fixed copyright * store correct values (#1) * added precision to compress bank; removed fixed points option * use end_idx for kmax * add catch for discontinuity in time estimate * have segment length computed on the fly * moved compress_waveform to compress module * compute segment length using log2 * fix bugs in seg length estimation and indexing * fix bug in returning sample points; increase seg length for time estimate 29 July 2016, 22:23:27 UTC
8da1f34 Allow pycbc_inference to take a list from config file and keep it as a list (#994) * Allow static_args to be lists * Change syntax * Fixed error 29 July 2016, 13:09:53 UTC
7e09d20 Update inference workflow example for GW150914. (#982) * Update inference workflow example for GW150914. * Change PSD interval. 28 July 2016, 10:09:06 UTC
0c02af7 Fix glitch in sensitivity plots with huge errorbar (#993) 27 July 2016, 21:20:23 UTC
a0b646b Uberbank workflow 2 (#991) * Let's try and make sanity plots work * Ongoing docs work * Try to make the dumpt_to_chi job work * Minor fix * Updating docs part 2 * Minor fix * Add dependancy of docs * Flatten arrays if only one input given. * Updating example .ini files * Loosen bounds in options_utils.py * Fix bank_verification and add it into workflow 27 July 2016, 13:52:55 UTC
02d70cb pass through fixing landscape errors (#985) * pass through fixing landscape errors * fix missing changed import * touch 27 July 2016, 13:47:26 UTC
7f81ca5 Store latest release on docs pages (#992) 27 July 2016, 13:46:51 UTC
db64e26 Uberbank workflow (#988) * Changes to allow uberbank * Add intiial uberbankr * Some tweaks to the sbank workflow * Changes to aligned_bank for uberbank * Changes to sbank for uberbank * Continuing to develop uberbank * Further changes to create_sbank_workflow * Retool uberbank workflow for 2 sbanks and 1 geom * Don't fail on missing daxes * Poke the retention_level stuff to allow updating * Put geom output in more sane place * Change default value for tags * Making landscape happy * Minor fix * Can't exactly moan when I don't fix my landscape 26 July 2016, 08:03:30 UTC
214885d Use SimIMRPhenomDChirpTime for Phenom waveforms and SPA chirp time for STF2 (#983) 22 July 2016, 13:37:04 UTC
8cb4e5e add file locking to weave to avoid multiprocessing headaches (#989) * add file locking to weave to avoid multiprocessing headaches * attempt to fix tests 22 July 2016, 13:33:57 UTC
42762b6 fix caching with id usage (#984) * fix caching with id usage * touch * touch * fix some sins so this doesn't fail landscape * remove unused import 21 July 2016, 16:35:34 UTC
004e8e0 Geom_bank updates (#986) * Move geom_bank to use HDF intermediate files * Optimize some blocks in coord_utils * Fix issues with coord_utils changes 20 July 2016, 12:06:47 UTC
be4ef6e making minifollowup jobs precession-proof (#987) 19 July 2016, 13:13:57 UTC
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