| 95a0076 | Balwinder Singh | 21 January 2022, 01:01:47 UTC | Fixes a typo in compy's intel cmake file This typo breaks model compilation in the debug mode on Compy Fixes #4746 [BFB] - Bit-For-Bit | 21 January 2022, 01:03:36 UTC |
| 7b97a89 | Peter Schwartz | 20 January 2022, 18:37:29 UTC | Merge remote-tracking branch 'glemieuxfork/fates-spmode-rgknox_cnp_base'(PR #4669) This pull request makes E3SM compatible with FATES API 17.0.0 which enables the use of the FATES satellite phenology mode (aka "sp mode"). While FATES SP mode is operating, the state variables of TLAI, TSAI, HTOP and WTCOL are manipulated (from the surface dataset files) in the native HLM PFT based index space. In this PR, we set up mapping from the FATES IFP space into the HLM P space in elmfates_interfaceMod.F90. Note that the TLAI, TSAI, and HTOP history outputs are updated with a logic check on use_fates_sp to substitute the HLM variable output with the relevant fates sp mode version of these variables, which are identified with the suffix _hist_patch. This PR also introduces FATES no competition mode (use_fates_nocomp), which along with fixed biogeography mode (use_fates_fixed_biogeog), are necessary dependencies for fates sp mode. Fixed biogeography has been enabled in the namelist definition (previously it was set as a stub). The SatellitePhenology procedure has been slightly refactored to represent that it accepts different filters depending on whether or not it is being called for FATES sp mode or ELM sp mode as the FATES sp mode implementation needs to have access to both the active and inactive soil filter. [nonBFB] FATES cases | 20 January 2022, 18:37:29 UTC |
| b396be8 | James Foucar | 20 January 2022, 17:43:33 UTC | Merge branch 'jgfouca/fix_mpas_cmake_missing_dep' into master (PR #4736) Fix missing dependency in one case of gen_f90_targets This bug was causing .F changes to not be reflected in rebuilds. Fixes #4341 [BFB] * jgfouca/fix_mpas_cmake_missing_dep: Fix missing dependency in one case of gen_f90_targets | 20 January 2022, 17:43:33 UTC |
| 4326367 | Balwinder Singh | 20 January 2022, 17:13:22 UTC | Merge remote-tracking branch 'mt5555/ninst-fixes' (PR #4654) Fix component namelist creation bugs when NINST>1 A few bug fixes when running with NINST>1, as is done in the E3SM nbfb test suite MPAS sea ice component should use NTASKS_PER_INST_ICE instead of NTASKS_ICE when determining which partition file to use Ensure ATM and LND put the initial conditions from all ensemble members into the inputdata file list Similar fixes should probably be applied to the MPAS ocean (NTASKS_PER_INST_OCN) and ensemble member inputdata parsing for both MPAS ocean and ice. Not done in this PR since we currently dont use this capability. fixes #4648, #4645 [BFB] * mt5555/ninst-fixes: fix component namelist creation bugs when NINST>1 | 20 January 2022, 17:13:22 UTC |
| e8cc524 | Jon Wolfe | 20 January 2022, 16:03:51 UTC | Merge branch 'jonbob/scripts/update-ocn-bgc' (PR #4686) Update BGC compsets to turn ocn bgc back on, add new ocn bgc init file Adds new ocn BGC files that are consistent with the current MARBL-based implementation. This allows the ocn BGC to be turned back on in BGC compsets. Fixes #4616 [non-BFB] only for BGC compsets | 20 January 2022, 16:03:51 UTC |
| 528e96a | Gautam Bisht | 17 January 2022, 21:42:47 UTC | Merge branch 'singhbalwinder/atm/sfeng-cpl-BPRP-lnd-atm' (PR #4703) This PR adds two land-atmosphere compsets (1850 and 20TR). Smoke tests are also added for these compsets. [BFB] | 17 January 2022, 21:42:47 UTC |
| 5de0be0 | Mark Taylor | 14 January 2022, 17:34:18 UTC | Merge branch 'mt5555/tom_sponge_start' (PR #4723) Add a simplified sponge layer with namelist variable (tom_sponge_start) to set the starting layer This is needed to run at high resolution with the E3SM 72L configuration (72L sponge layer is too thin, it starts at the 1mb layer). 72L configurations will crash at NE256 and higher resolution without making the sponge layer thicker. It will also be useful for the SCREAM 128L configuration, where the sponge layer is most likely too thick (it starts at the 20mb layer) default: tom_sponge_start=0 (disabled). documentation: https://acme-climate.atlassian.net/wiki/spaces/DOC/pages/2967798203/EAM+Top+of+Model+Sponge+Layer [BFB] | 15 January 2022, 17:03:14 UTC |
| b77e4b7 | Mark Taylor | 14 January 2022, 17:35:58 UTC | Merge branch 'brhillman/eam/fix-adjust-ps-scream' (PR #4717) Make setting of adjust_ps consistent with SCREAM repo. We want to allow adjust_ps=.false. for SCREAM, but retain adjust_ps=.true. for E3SM to remain BFB for v2. This change was originally made downstream in SCREAM, but causes conflicts between the two repos, and prevents EAM compsets from being BFB between the E3SM and SCREAM repos. Moving this change upstream, protected in an ifdef, allows the two repos to be consistent, and keeps EAM compsets BFB between the SCREAM and E3SM repos. This also sets the precedent for allowing changes upstream in E3SM that should apply only to SCREAM configurations, protected in ifdef SCREAM. To enable, we simply need to add the -cppdefs '-DSCREAM' flag to CAM_CONFIG_OPTS for SCREAM compsets. [BFB] | 15 January 2022, 17:01:56 UTC |
| 58826d8 | Mark Taylor | 14 January 2022, 17:32:27 UTC | Merge branch 'mt5555/imex-unit-tests' into master (PR #4731) turn on (during startup) IMEX test of analytic jacobian ( verify that it it agrees with numerical approximation) turn on (during startup) test of the A. Bradley tridiagonal solver [BFB] | 14 January 2022, 22:07:48 UTC |
| 8441102 | Jon Wolfe | 14 January 2022, 15:53:45 UTC | Merge branch 'jonbob/ocn/fix-bulk-forcing' (PR #4733) Make surfaceTemperatureFluxWithoutRunoff private in omp pragma This PR adds surfaceTemperatureFluxWithoutRunoff to an omp pragma to be private for a loop in the mpas-ocean routine ocn_surface_bulk_forcing_active_tracers. It was causing some tests to be irreproducible when run with threading on. Fixes #4732 [non-BFB] for some threaded tests | 14 January 2022, 15:53:45 UTC |
| ce6b973 | Gregory Lemieux | 13 January 2022, 22:02:59 UTC | Updating assignment to fates pft_areafrac If not using a surface dataset with topounits, only access the first index for the topounit dimension as max_topounit is defined in these cases to be one. Otherwise we uses the column type indexing. | 13 January 2022, 22:02:59 UTC |
| f6bb0c5 | Oksana Guba | 13 January 2022, 21:17:53 UTC | Merge branch 'origin/oksanaguba/homme/bubble-rjmods' into next (PR #4482) This fixes an oversaturated state in the moist bubble initialization. Also, qsat in initialization now depends on RJ or Kessler physics. [nonbfb] for 1 homme test, moist bubble. | 13 January 2022, 21:17:53 UTC |
| 75ec9db | James Foucar | 13 January 2022, 19:53:26 UTC | Fix missing dependency in one case of gen_f90_targets This bug was causing .F changes to not be reflected in rebuilds. [BFB] | 13 January 2022, 19:53:26 UTC |
| 92fe52f | James Foucar | 13 January 2022, 19:10:30 UTC | Merge branch 'azamat/perf-tests/add-e3sm-prod-perf-tests' into master (PR #4728) Extend e3sm_prod testing with throughput and memory checks 1) add XML variable TEST_MEMLEAK_TOLERANCE for Chrysalis 2) add e3sm_prod_bench no-IO test suite This helps detect throughput and memory regressions while integrating new features. [BFB] * origin/azamat/perf-tests/add-e3sm-prod-perf-tests: Extend e3sm_prod testing with throughput and memory checks | 13 January 2022, 19:10:30 UTC |
| f74c6d2 | Jon Wolfe | 13 January 2022, 16:01:39 UTC | Merge branch 'jonbob/test/add-cmpaso-debug' (PR #4734) Add SMS_D_Ld3.T62_oQU120.CMPASO-IAF to e3sm_integration This PR adds a new test SMS_D_Ld3.T62_oQU120.CMPASO-IAF to e3sm_integration as a follow-up to PR #4733, which was uncovered from running this test by hand. [BFB] | 13 January 2022, 16:01:39 UTC |
| a793e4f | Jon Wolfe | 12 January 2022, 21:13:38 UTC | Add SMS_D_Ld3.T62_oQU120.CMPASO-IAF to e3sm_integration | 12 January 2022, 21:13:38 UTC |
| c1e8a78 | Jon Wolfe | 12 January 2022, 20:43:37 UTC | Make surfaceTemperatureFluxWithoutRunoff private in omp pragma | 12 January 2022, 20:43:37 UTC |
| 974743b | Azamat Mametjanov | 11 January 2022, 01:46:58 UTC | Extend e3sm_prod testing with throughput and memory checks | 12 January 2022, 20:17:58 UTC |
| 5a230dd | James Foucar | 12 January 2022, 19:35:10 UTC | Merge branch 'jgfouca/cime_update_2022_01_11' into master (PR #4730) to b0ada2143def2bfc5f6d42941486d8264a52628a Changes: 1) Extend throughput and memory checking in baseline tests 2) Introduce a new compset naming convention which maintains backward compatibility and allows position independence. Fixes: 1) FUNIT needs CIME_NO_CMAKE_MACRO ON for now [BFB] * jgfouca/cime_update_2022_01_11: Update CIME submodule Update CIME submodule | 12 January 2022, 19:35:10 UTC |
| 7b2601b | Mark Taylor | 12 January 2022, 16:43:37 UTC | Merge branch 'mt5555/remove-deta' (PR #4724) Remove two unused variables. Causes roundoff level changes in some standalone HOMME tests due to change in loop structure and size of hyvcoord struct. [BFB] except for some standalone HOMME tests | 12 January 2022, 16:43:37 UTC |
| c657b6f | Jon Wolfe | 11 January 2022, 19:44:24 UTC | Merge branch 'alicebarthel/ocn/fix-ml-heat-budget' (PR #4715) Fix calculation of the ML-averaged Brunt-Vaisala frequency This PR is correcting isuues in the calculation of the mixed-layer-averaged Brunt-Vaisala frequency Changes included: * corrected last layer thickness to partial in bruntVaisalaFreqML calculation * fetch index_temp as best practice (instead of assuming index_temp=1) [BFB] | 11 January 2022, 19:44:24 UTC |
| e677e18 | James Foucar | 11 January 2022, 17:19:55 UTC | Update CIME submodule to b0ada2143def2bfc5f6d42941486d8264a52628a Changes: 1) Extend throughput and memory checking in baseline tests 2) Introduce a new compset naming convention which maintains backward compatibility and allows position independence. Fixes: 1) FUNIT needs CIME_NO_CMAKE_MACRO ON for now [BFB] | 11 January 2022, 17:19:55 UTC |
| bfdc5a2 | Mark Taylor | 10 January 2022, 16:14:50 UTC | re-enable imex unit tests | 10 January 2022, 16:14:50 UTC |
| 5ec00ed | Mark Taylor | 09 January 2022, 22:09:55 UTC | Merge branch 'mt5555/remap-options2' (PR# 4722) Remove obsolete/unused remap algorithms add q_alg=11 ( from @ambrad - more accurate, doesn't impose monotonicity at boundaries) added option to specify dynamics algorithm independently from tracer algorithm (from Jason Torchinsky summer intern project) q_alg=11 fixes long standing issue with noise in HOMME's internal gravity wave test cases [BFB] except for one HOMME test, which was modified to test the new code. | 09 January 2022, 22:09:55 UTC |
| d97bfd2 | James Foucar | 06 January 2022, 21:45:47 UTC | Update CIME submodule ... to bc80870bfa0b08d154e89b1fd46493cad1b39a02 Changes: 1) Split CESM configs out of repo 2) Adds enforcing code formatting to pre-commit 3) Refactor all CIME internal testing, split into smaller files and move to a more-logical dir 4) Cleanup Scorpio I/O performance data in the run directory 5) Remove documentation sections for pieces no longer included in CIME 6) Improve Macro.make generation Fixes: *) Loads of small fixes related to recent code churn. 1) Cleanup Scorpio I/O performance data in the run directory [BFB] | 07 January 2022, 22:43:12 UTC |
| e7beed5 | Mark Taylor | 07 January 2022, 19:55:27 UTC | update unit test after q_alg=1,2 removal | 07 January 2022, 21:00:39 UTC |
| b3e8364 | Alice Barthel | 07 January 2022, 17:36:11 UTC | modified comment on partial thickness to clarify | 07 January 2022, 17:36:11 UTC |
| ccea41d | Mark Taylor | 07 January 2022, 16:41:32 UTC | remove unneeded reamp_alg argument from compute_ppm() | 07 January 2022, 16:41:32 UTC |
| 61214eb | Peter Schwartz | 06 January 2022, 22:28:44 UTC | Merge branch 'bishtgautam/lnd/mkmapdata' (PR #4602) The script that lists all the maps needed for creating a new ELM surface dataset is fixed to account for the name change of the land model to ELM ELM tools directory is reorganized by moving all tools from clm4_5 and shared directory to one-level up. The old directory structure was inherited from CESM in which tools supported two models (clm4_0 and clm4_5) with a common shared directory. [BFB] | 06 January 2022, 22:28:44 UTC |
| e7789f5 | Mark Taylor | 06 January 2022, 21:11:26 UTC | Merge remote-tracking branch 'mt5555/cleanup' (PR #4721) Remove a lot of obsolete code three minor bug fixes: lap_p_wk array dimension, Nthreads=-1 logic: only enable threads if HORIZ_OPENMP or COLUMN_OPENMP enabled parseE3.py typo [BFB] | 06 January 2022, 21:11:26 UTC |
| 72e8ca9 | Mark Taylor | 06 January 2022, 01:24:38 UTC | remove unused variables | 06 January 2022, 01:24:38 UTC |
| 13f6b81 | Mark Taylor | 04 July 2021, 19:21:25 UTC | add simplified sponge layer including namelist option to specify sponge layer bottom/start | 05 January 2022, 20:24:29 UTC |
| ddebdcb | Mark Taylor | 04 January 2022, 23:44:32 UTC | improve 10/11 logic | 04 January 2022, 23:44:32 UTC |
| 22cc2f7 | Gregory Lemieux | 04 January 2022, 22:46:58 UTC | Updating to latest api 17 fates science tag In order to include the IBMfix branch tag commit, it is necessary to update to sci.1.49.2_api.17.0.0 at the least. Since the sci.1.15.0_api.17.0.0 tag is the last science update prior to a new api update, this one was selected. | 04 January 2022, 22:46:58 UTC |
| 60a5bdf | Jon Wolfe | 03 January 2022, 21:16:43 UTC | Update tests and testdefs to reflect new compsets and files | 03 January 2022, 21:16:43 UTC |
| 1ee0965 | Jon Wolfe | 03 January 2022, 19:40:47 UTC | Remove oEC60to30v3 eco option, since it will no longer work | 03 January 2022, 19:40:47 UTC |
| 29bb14f | Mark Taylor | 03 January 2022, 00:28:40 UTC | update unit tests for interface changes | 03 January 2022, 00:28:40 UTC |
| 745a96e | Mark Taylor | 02 January 2022, 23:48:57 UTC | check for ncl in runall script | 02 January 2022, 23:48:57 UTC |
| 3053da2 | Mark Taylor | 02 January 2022, 23:42:55 UTC | remove hypervis_power (more) | 02 January 2022, 23:42:55 UTC |
| de9d2d0 | Mark Taylor | 02 January 2022, 19:17:46 UTC | add vert_remap_u_alg option | 02 January 2022, 23:33:15 UTC |
| eba902c | Mark Taylor | 29 December 2021, 06:08:08 UTC | update test case to test q_alg=11 | 02 January 2022, 19:17:09 UTC |
| 4c6b9f9 | Mark Taylor | 28 December 2021, 00:38:58 UTC | update comments | 02 January 2022, 19:15:12 UTC |
| 740620f | Balwinder Singh | 01 January 2022, 22:33:40 UTC | Adds 20TR and 1850 tests for BGC | 01 January 2022, 22:33:40 UTC |
| 37c20c2 | Balwinder Singh | 01 January 2022, 22:21:21 UTC | Removes BPRP compset, adds Land-atm compsets and addresses comments [BFB] - Bit-For-Bit | 01 January 2022, 22:21:21 UTC |
| 790bc2c | Mark Taylor | 26 December 2021, 23:40:57 UTC | add remap alg option to SL code | 26 December 2021, 23:54:25 UTC |
| 9a8d580 | Mark Taylor | 21 February 2021, 16:22:59 UTC | reorg vertical remap code and add new options vert_remap_q_alg=0 unchanged vert_remap_q_alg=1 unchanged vert_remap_q_alg=2 removed vert_remap_q_alg=3 removed (it was identical to 1) vert_remap_q_alg=10 unchanged vert_remap_q_alg=11 new: q_alg=10 with out limiters, for research [BFB] | 26 December 2021, 23:35:10 UTC |
| 4849b2e | Mark Taylor | 24 December 2021, 23:37:06 UTC | typo in python parsing script | 25 December 2021, 14:23:57 UTC |
| 3ed833c | Mark Taylor | 24 December 2021, 23:36:46 UTC | fix wrong dimensions | 25 December 2021, 14:23:56 UTC |
| f56c25d | Mark Taylor | 24 December 2021, 22:50:48 UTC | remove extraneous lines from some CMakeLists.txt files These cmake files define macros that are used by other executables. The should only contain the setup macro and a call to createTestExec() Any other commands wont be run by the other executables | 25 December 2021, 14:23:56 UTC |
| d680cb8 | Mark Taylor | 24 December 2021, 22:49:45 UTC | add comments about EOS needing to return dpnh_i=1 at surface | 25 December 2021, 14:23:56 UTC |
| e8d6a19 | Mark Taylor | 24 December 2021, 22:49:13 UTC | remove obsolete HOMME_IMEX_MKLSOLVE code | 25 December 2021, 14:23:56 UTC |
| 3db07e8 | Mark Taylor | 20 April 2021, 16:34:15 UTC | dont run a state check when scale3=0 | 25 December 2021, 14:23:56 UTC |
| 7a1ab5f | Mark Taylor | 20 April 2021, 16:29:40 UTC | remove unused qn0 argument | 25 December 2021, 14:23:56 UTC |
| 07546bd | Mark Taylor | 20 April 2021, 14:02:56 UTC | remove hypervis_power restore correct var_coef behavoir remove hypervis power2 | 25 December 2021, 14:23:48 UTC |
| c7a8708 | Mark Taylor | 20 April 2021, 13:45:28 UTC | dont try to turn on horiz/vert threads if no compiler support remove unecessary if statement in nu_div/nu logic remove unused namelist variable | 24 December 2021, 21:47:02 UTC |
| 962e16e | Gregory Lemieux | 23 December 2021, 23:41:45 UTC | adding fates satellite phenology test | 23 December 2021, 23:41:45 UTC |
| b076971 | Gregory Lemieux | 23 December 2021, 22:08:02 UTC | Merge branch 'master' into fates-spmode-rgknox_cnp_base | 23 December 2021, 22:08:02 UTC |
| dd244ac | Benjamin R. Hillman | 23 December 2021, 21:03:02 UTC | Make adjust_ps consistent with SCREAM Make setting of adjust_ps consistent with SCREAM repo. We want to allow adjust_ps=.false. for SCREAM, but retain adjust_ps=.true. for E3SM to remain BFB for v2. This change was originally made downstream in SCREAM, but causes conflicts between the two repos, and prevents EAM compsets from being BFB between the E3SM and SCREAM repos. Moving this change upstream, protected in an ifdef, allows the two repos to be consistent, and keeps EAM compsets BFB between the SCREAM and E3SM repos. This also sets the precedent for allowing changes upstream in E3SM that should apply only to SCREAM configurations, protected in ifdef SCREAM. To enable, we simply need to add the -cppdefs '-DSCREAM' flag to CAM_CONFIG_OPTS for SCREAM compsets. [BFB] | 23 December 2021, 21:03:02 UTC |
| 679cebf | Oksana Guba | 23 December 2021, 18:39:55 UTC | Merge branch 'origin/oksanaguba/homme/xx-ttype9' into master (PR #4682) Adding ttype9 and dcmip2012 tests 2.1, 2.2, and 3 to the bfb suite. Converting some of the tests to ttype9. Not yet added is a limiter call between ttype9 stages. There will be another PR to move limiter from CaarFunctorImpl and to verify it is bfb with F code. [nonbfb] for homme bfb suite for theta-fhs3 (now with ttype9) and new baselines for theta-fdc tests. | 23 December 2021, 18:39:55 UTC |
| 7e954ba | Robert Jacob | 23 December 2021, 18:36:19 UTC | Merge branch 'wlin/atm/update_ftest_ena_twp_rrm' (PR #4655) F2010 is being used in extra coverage test suite for enax4v1 and twpx4v1, and the tests failed to proceed. Change to use compset F2010-CICE as no mpas mesh has been configured to work with these two atm RRM meshes. [BFB] | 23 December 2021, 18:36:19 UTC |
| 80a67f0 | Jon Wolfe | 23 December 2021, 15:59:37 UTC | Merge branch 'mark-petersen/lanl-scratch3' (PR #4716) Update LANL scratch3 to scratch4 LANL /lustre/scratch3 will be decommissioned January 4, 2022. All data should now be written to /lustre/scratch4. This updates the machine files for LANL grizzly and badger. [BFB] | 23 December 2021, 15:59:37 UTC |
| a3b22b9 | mark-petersen | 22 December 2021, 22:29:30 UTC | Update LANL scratch3 to scratch4 LANL /lustre/scratch3 will be decommisioned January 4, 2022. All data should now be written to /lustre/scratch4. | 22 December 2021, 22:29:30 UTC |
| 78b2f4d | Gregory Lemieux | 22 December 2021, 07:08:09 UTC | Reinstating p indexing accidentally removed This line was accidentally removed during an update | 22 December 2021, 07:08:09 UTC |
| acc9bbe | James Foucar | 22 December 2021, 01:09:06 UTC | Merge branch 'jgfouca/use_lmod_modules_for_mappy' into master (PR #4714) Use lmod modules for mappy [BFB] | 22 December 2021, 01:09:06 UTC |
| 5fd19d6 | James Foucar | 22 December 2021, 01:05:17 UTC | Use lmod modules for mappy | 22 December 2021, 01:05:17 UTC |
| 6528b78 | Azamat Mametjanov | 21 December 2021, 21:52:10 UTC | Merge remote-tracking branch 'mt5555/slurm-bindings' (PR #4712) Update some srun settings for HOMME tests Recent upgrades on Anvil/Chrysalis require setting the -c option to avoid poor performance when running with threads. Now that scripts set -c, remove hardcoded -c options on Cori. Also - fixed CPRNC path for Anvil/Chrysalis (they were swapped) - updated CPRNC path on Cori (it was using an ancient version that couldn't parse newer output files) - fixed CMAKE to pass MPI options to the limiter_ut test. srun hangs on Compy without --mpi=pmi2 On compy, HOMME machine file compy.cmake changed to a link, linked to compy-intel.cmake [BFB] | 21 December 2021, 21:52:10 UTC |
| 46b5c6b | Wuyin Lin | 21 December 2021, 15:03:54 UTC | Merge branch 'wlin/atm/diags_tropopause_cpp' (PR #4713) New algorithm for determining tropopause and additional diagnostic output Add a new algorithm for determining tropopause: cold point parabolic. Output at additional levels in the stratosphere are also added. While the new algorithm is enabled during runtime, no additional variables are saved by default. [BFB] | 21 December 2021, 15:03:54 UTC |
| 9ffdb63 | Wuyin Lin | 21 December 2021, 00:12:04 UTC | New algorithm for determining tropopause and additional diagnostic output Add a new algorithm for determining tropopause: cold point parabolic. Output at additional levels in the stratosphere are also added. While the new algorithm is enabled during runtime, no additional variables are saved by default. [BFB] | 21 December 2021, 00:12:04 UTC |
| fa890d1 | Mark Taylor | 19 December 2021, 20:23:18 UTC | tweaks to pass MPI arguments to unit test | 19 December 2021, 20:23:18 UTC |
| 1d7b57c | Balwinder Singh | 19 December 2021, 15:21:59 UTC | Merge branch 'singhbalwinder/machines/sooty-mach-update' (PR #4668) Updates PNNL- Sooty's machine files to use PIO2 and other module changes Some recent machine files updates by Phil Rasch to run E3SM v2 on PNNL cluster Sooty. * singhbalwinder/machines/sooty-mach-update: Updates machine files to use PIO2 and other module changes | 19 December 2021, 15:21:59 UTC |
| 89ef6be | Mark Taylor | 18 December 2021, 20:34:11 UTC | thread bindings for knl and haswell, update cprnc path | 18 December 2021, 20:34:11 UTC |
| d3a4a5c | Gregory Lemieux | 18 December 2021, 01:06:58 UTC | sum the weights for nat veg across all topounits for a given gridcell | 18 December 2021, 01:06:58 UTC |
| 004d15e | noel | 17 December 2021, 19:52:52 UTC | Merge branch E3SM-Project/ndk/machinefiles/correct-small-pelayout-knl-ne120pg2 (PR #4705) After recent PR, correct PE layout for "S" size of ne102pg2 F cases using CICE | 17 December 2021, 19:52:52 UTC |
| 9c0c5b3 | Gregory Lemieux | 17 December 2021, 18:24:53 UTC | adding endrun call after lai check | 17 December 2021, 18:24:53 UTC |
| 8ab5faf | Gregory Lemieux | 17 December 2021, 18:22:35 UTC | updating to latest api 17 fates param file | 17 December 2021, 18:22:35 UTC |
| b5525f3 | noel | 17 December 2021, 17:46:39 UTC | Merge branch E3SM-Project/ndk/machinefiles/perlmutter-env-update (PR #4710) Update module environment for Perlmutter | 17 December 2021, 17:46:39 UTC |
| a445407 | Mark Taylor | 17 December 2021, 17:31:44 UTC | anvil/chrysalis threading and cprnc fix fixes to standalone HOMME: correct cprnc paths for anvil, chrysalis add cores-per-task srun option (otherwise HOMME threading tests have terrible performance) | 17 December 2021, 17:31:44 UTC |
| 60ec507 | Jon Wolfe | 16 December 2021, 19:51:01 UTC | Merge branch 'akturner/seaice/kstrength_constant_bug' (PR #4702) Removed Cf from sea ice constants The sea ice parameter Cf (config_ratio_ridging_work_to_PE) was incorrectly set in both constants and shared parameters in the column package, so that changing config_ratio_ridging_work_to_PE had no effect. Removed Cf from constants. Fixes #4701 [BFB] (Unless config_ratio_ridging_work_to_PE changed) | 16 December 2021, 19:51:01 UTC |
| d02413b | jayeshkrishna | 16 December 2021, 17:47:46 UTC | Merge branch 'dqwu/anlgce/downgrade-netcdf-lib' (PR #4706) Some E3SM cases run on the ANL GCE nodes with the netcdf4p type and NetCDF 4.8.1 might return NC_EHDFERR from nc_enddef(). So switching back to NetCDF 4.8.0, an older but more stable release. For consistency on GCE nodes, we downgrade the serial version of the NetCDF lib to 4.8.0 as well. [BFB] | 16 December 2021, 17:47:46 UTC |
| 4af5914 | wadeburgess | 16 December 2021, 16:10:07 UTC | Merge pull request #4708 from E3SM-Project/wadeburgess-patch-1 Edit sandiatoss3 to change 'gpfs1' to 'gpfs' | 16 December 2021, 16:10:07 UTC |
| e778eaf | wadeburgess | 16 December 2021, 15:20:18 UTC | Edit sandiatoss3 to change 'gpfs1' to 'gpfs' | 16 December 2021, 15:20:18 UTC |
| cc97cda | dqwu | 15 December 2021, 21:41:45 UTC | Downgrading NetCDF lib from 4.8.1 to 4.8.0 for ANL GCE nodes It has been confirmed that some E3SM cases run on ANL GCE nodes with netcdf4p type and latest NetCDF 4.8.1 might return NC_EHDFERR from nc_enddef(). An issue has been created for NetCDF developers to fix. Before this issue is fixed in newer releases of NetCDF, we have to switch back to NetCDF 4.8.0, an older but more stable release. For consistency on GCE nodes, we downgrade the serial version of the NetCDF lib to 4.8.0 as well. | 15 December 2021, 21:41:45 UTC |
| c8d23d2 | jayeshkrishna | 15 December 2021, 21:20:03 UTC | Merge branch 'dqwu/anlgce/add-mpilib-mpi-serial' (PR #4665) Define NETCDF_PATH for E3SM to use a serial NetCDF lib installed on anlgce when mpilib is set to mpi-serial. This fix is required to run SMS_D_Ln9_Mmpi-serial.f19_g16_rx1.A, a cime_developer test that uses mpi-serial. [BFB] | 15 December 2021, 21:20:03 UTC |
| 2e14457 | noel | 15 December 2021, 18:37:45 UTC | After recent PR, correct PE layout for "S" size of ne102pg2 F cases using CICE [bfb] | 15 December 2021, 18:37:45 UTC |
| de04350 | noel | 15 December 2021, 18:29:02 UTC | Merge branch E3SM-Project/ndk/machinefiles/cori-knl-pe-layouts-ne120pg2 (PR #4696) Update PE layouts on cori-knl for ne120pg2 F compsets | 15 December 2021, 18:29:02 UTC |
| 33b4841 | Jon Wolfe | 15 December 2021, 16:17:28 UTC | Merge branch 'njeffery/seaice/correct_don_coupling' (PR #4699) Corrects coupling of ocean surface DON with sea ice DON Replaces index_x2i_So_don1 with index_x2i_So_doc3 in ice_comp_mct. Fixes issue #4698 [non-BFB] only with ocean and sea ice BGC active | 15 December 2021, 16:17:28 UTC |
| 30a7f2b | Jon Wolfe | 15 December 2021, 16:12:25 UTC | Merge branch 'akturner/seaice/testcase_grid_ccw_error' (PR #4691) Updated seaice spherical test cases for current MPAS mesh spec Update sea ice test cases to use spherical unit meshes that comply with current MPAS mesh spec. Also update PWL variational method to use the current MPAS mesh spec Fixes #4690 [BFB] | 15 December 2021, 16:12:25 UTC |
| f41bbe6 | Balwinder Singh | 14 December 2021, 00:37:07 UTC | Cleanup - Removes commented out codes | 14 December 2021, 00:37:07 UTC |
| 35076fe | Adrian K. Turner | 14 December 2021, 00:02:29 UTC | Removed Cf from sea ice constants | 14 December 2021, 00:02:29 UTC |
| d64cdc1 | Peter Schwartz | 13 December 2021, 18:20:19 UTC | Merge remote-tracking branch 'pnlfangfork/pnlfang/fix_restart_bfb_error'(PR #4688) This bug fix is related to the restart bfb error when plant hydraulics is activated. [BFB] | 13 December 2021, 18:20:19 UTC |
| db532d1 | noel | 13 December 2021, 17:17:49 UTC | whitespace cleanup | 13 December 2021, 17:17:49 UTC |
| 98af778 | Nicole Jeffery | 13 December 2021, 17:12:43 UTC | Corrects coupling of ocean surface DON with sea ice DON. Replaces index_x2i_So_don1 with index_x2i_So_doc3 in ice_comp_mct. non-BFB with ocean and sea ice BGC active. BFB otherwise. Fixes issue #4698 | 13 December 2021, 17:12:43 UTC |
| 0c857cc | Alice Barthel | 13 December 2021, 16:51:29 UTC | 1. corrected last layer thickness to partial, 2. fetch index_temp as best practice | 13 December 2021, 16:51:29 UTC |
| c40a28c | noel | 11 December 2021, 00:40:48 UTC | Add allow_error="true" to try getting around module "error" messages. | 11 December 2021, 00:40:48 UTC |
| 379fbcc | noel | 10 December 2021, 23:10:59 UTC | For Perlmutter, Update modules for cuda after maint. | 10 December 2021, 23:10:59 UTC |
| 170450b | noel | 10 December 2021, 21:46:21 UTC | Update PE layouts on cori-knl for ne120pg2 F compsets Add S,M,L,X,T for MPASSI and update S,M,L,X,T for CICE [bfb] | 10 December 2021, 21:46:21 UTC |
| 963a908 | Jon Wolfe | 09 December 2021, 00:48:15 UTC | Remove DMS from ocean options in BGC compsets, not currently supported | 09 December 2021, 00:48:15 UTC |
| 89d4726 | Jon Wolfe | 08 December 2021, 17:16:49 UTC | Merge branch 'xylar/ocean/fix-two-analysis-member-restart-filename-intervals' (PR #4687) Fix filename interval for 2 analysis member restarts The Eliassen-Palm and time-filters analysis members both had hard-coded restart file intervals of 1 year. This causes restarts with these analysis members to fail in situations where the restart interval does not match the file interval. This merge changes the filename interval to be the same as the output interval to match restart streams in all other analysis members. [BFB] | 08 December 2021, 17:16:49 UTC |
| 9233213 | Adrian K. Turner | 08 December 2021, 15:14:57 UTC | Updated seaice spherical test cases for current MPAS mesh spec | 08 December 2021, 15:14:57 UTC |
| c2cd51a | Gautam Bisht | 07 December 2021, 23:22:27 UTC | Merge branch 'singhbalwinder/elm/ozone-dry-dep-bug-fix' (PR #4678) Currently, stomatal resistances for shaded and sunlit leaves are added in series but they should be added in parallel Fixes #4677 [BFB] | 07 December 2021, 23:22:27 UTC |
