https://github.com/genome/genome
Revision 97cd34f3b8d5ea485eba3e550d589f807ddf8046 authored by Susanna Kiwala on 30 November 2015, 15:02:16 UTC, committed by Susanna Kiwala on 30 November 2015, 15:02:16 UTC
2 parent s 12d953f + f5f263f
Raw File
Tip revision: 97cd34f3b8d5ea485eba3e550d589f807ddf8046 authored by Susanna Kiwala on 30 November 2015, 15:02:16 UTC
Merge pull request #1079 from susannasiebert/epitope_prediction_parser
Tip revision: 97cd34f
basic.bats
#!/usr/bin/env bats

load test_helper
export BATS_TEST_DIRNAME

function setup {
    init_workspace
    export GE_NO_REDIRECT=1
    cd $WORKSPACE/genome
}

function teardown {
    rm_workspace
}

@test "basic test: genome-env" {
    $BATS_TEST_DIRNAME/../bin/genome-env "$BATS_TEST_DIRNAME/testexec/default.sh"
}

@test "basic test: genome-env -D" {
    $BATS_TEST_DIRNAME/../bin/genome-env -D "$BATS_TEST_DIRNAME/testexec/D.sh"
}

@test "basic test: genome-env -U" {
    export PERL5LIB="$WORKSPACE/ur/lib:$PERL5LIB"
    $BATS_TEST_DIRNAME/../bin/genome-env -D -U "$BATS_TEST_DIRNAME/testexec/U.sh"
}

@test "basic test: genome-env -u" {
    $BATS_TEST_DIRNAME/../bin/genome-env -D -u $WORKSPACE/ur "$BATS_TEST_DIRNAME/testexec/U.sh"
}

@test "basic test: genome-env -W" {
    export PERL5LIB="$WORKSPACE/workflow/lib:$PERL5LIB"
    $BATS_TEST_DIRNAME/../bin/genome-env -D -W "$BATS_TEST_DIRNAME/testexec/W.sh"
}

@test "basic test: genome-env -w" {
    $BATS_TEST_DIRNAME/../bin/genome-env -D -w $WORKSPACE/workflow "$BATS_TEST_DIRNAME/testexec/W.sh"
}

@test "basic test: genome-env -M" {
    $BATS_TEST_DIRNAME/../bin/genome-env -D -M "$BATS_TEST_DIRNAME/testexec/M.sh"
}

@test "basic test: genome-env -m" {
    $BATS_TEST_DIRNAME/../bin/genome-env -m $WORKSPACE/genome-sqitch "$BATS_TEST_DIRNAME/testexec/migration.sh"
}
back to top