| 995842e | Josh Siegle | 19 May 2021, 23:30:17 UTC | Add comma | 19 May 2021, 23:30:17 UTC |
| 1b9d8a5 | Josh Siegle | 25 March 2021, 00:56:10 UTC | Merge pull request #60 from AllenInstitute/ks3 Compatibility with Kilosort3 | 25 March 2021, 00:56:10 UTC |
| f8e1765 | Josh Siegle | 25 March 2021, 00:51:33 UTC | Merge branch 'master' of https://github.com/alleninstitute/ecephys_spike_sorting into ks3 | 25 March 2021, 00:51:33 UTC |
| f1ae0d6 | Josh Siegle | 25 March 2021, 00:50:42 UTC | Update postprocessing module for KS3 | 25 March 2021, 00:50:42 UTC |
| 2117c80 | Josh Siegle | 09 March 2021, 21:48:17 UTC | Merge pull request #58 from AllenInstitute/ks3 Updates for Kilosort3 compatibility | 09 March 2021, 21:48:17 UTC |
| 0c4d082 | Josh Siegle | 09 March 2021, 21:33:44 UTC | Minor fixes | 09 March 2021, 21:33:44 UTC |
| 6d32500 | Josh Siegle | 08 March 2021, 21:54:25 UTC | Update input JSON generator | 08 March 2021, 21:54:25 UTC |
| beb1c91 | Josh Siegle | 08 March 2021, 21:53:31 UTC | Add option to ignore PC-based metrics | 08 March 2021, 21:53:31 UTC |
| 93195c5 | Josh Siegle | 08 March 2021, 21:49:09 UTC | Add option to sort with KS3 | 08 March 2021, 21:49:09 UTC |
| e960a42 | Josh Siegle | 08 March 2021, 21:42:40 UTC | Squeeze channel_map on load | 08 March 2021, 21:42:40 UTC |
| 3aa6b97 | Josh Siegle | 06 October 2020, 17:45:20 UTC | Merge branch 'master' of https://github.com/alleninstitute/ecephys_spike_sorting | 06 October 2020, 17:45:20 UTC |
| d880363 | Josh Siegle | 06 October 2020, 17:45:13 UTC | Comment out tests until they can be updated | 06 October 2020, 17:45:13 UTC |
| f54de18 | Josh Siegle | 06 October 2020, 16:07:25 UTC | Merge pull request #53 from mmyros/master Two more checks for PC metrics | 06 October 2020, 16:07:25 UTC |
| 1a143a6 | Josh Siegle | 06 October 2020, 16:06:46 UTC | Comment out tests until they can be updated | 06 October 2020, 16:06:46 UTC |
| b8c96bb | Max Myroshnychenko | 06 October 2020, 12:57:43 UTC | Update .travis.yml | 06 October 2020, 12:57:43 UTC |
| 83f6a32 | Max Myroshnychenko | 06 October 2020, 12:53:42 UTC | Update .travis.yml | 06 October 2020, 12:53:42 UTC |
| 6ffeb8e | Max Myroshnychenko | 06 October 2020, 12:29:42 UTC | Update .travis.yml | 06 October 2020, 12:29:42 UTC |
| 6e5923f | maxym Myroshnychenko | 06 October 2020, 12:25:25 UTC | Two more checks for PC metrics: Not all labels are this cluster and No fewer than 20 spikes in this cluster | 06 October 2020, 12:25:25 UTC |
| 37f7c18 | Josh Siegle | 31 August 2020, 21:19:12 UTC | Add NpxExtractor source code + executable | 31 August 2020, 21:19:12 UTC |
| d9d041e | Josh Siegle | 11 August 2020, 19:06:48 UTC | Update L-ratio normalization method | 11 August 2020, 19:06:48 UTC |
| ef02966 | Josh Siegle | 11 August 2020, 18:59:37 UTC | Update Linux makefile | 11 August 2020, 18:59:37 UTC |
| 4bdd06b | Josh Siegle | 02 July 2020, 21:16:44 UTC | Merge pull request #51 from mmyros/master Parallelization using joblib | 02 July 2020, 21:16:44 UTC |
| e64749c | maxym Myroshnychenko | 27 June 2020, 01:29:45 UTC | joblib requirement | 27 June 2020, 01:29:45 UTC |
| ba1ff07 | maxym Myroshnychenko | 24 June 2020, 16:19:49 UTC | Fix for silhouette_score indexing | 24 June 2020, 16:19:49 UTC |
| 09a7f60 | maxym Myroshnychenko | 24 June 2020, 15:20:54 UTC | Joblib parallelization of calculate_pc_metrics | 24 June 2020, 15:20:54 UTC |
| c5d4b63 | maxym Myroshnychenko | 24 June 2020, 12:57:02 UTC | Parallel silhouette and drift metrics using joblib | 24 June 2020, 12:57:02 UTC |
| 8829943 | Josh Siegle | 14 May 2020, 17:32:36 UTC | Merge pull request #49 from AllenInstitute/ks1-compatibility Fix PC metrics in cases where spike_templates != spike_clusters | 14 May 2020, 17:32:36 UTC |
| f430f28 | Josh Siegle | 14 May 2020, 17:24:40 UTC | Fix version incompatibility between argschema and marshmallow | 14 May 2020, 17:24:40 UTC |
| 9d126ca | Josh Siegle | 14 May 2020, 17:16:45 UTC | Remove unused pillow dependency | 14 May 2020, 17:16:45 UTC |
| 55253fd | Josh Siegle | 14 May 2020, 17:13:25 UTC | Update batch processing script | 14 May 2020, 17:13:25 UTC |
| 2736fd7 | Josh Siegle | 11 May 2020, 22:49:10 UTC | Metrics now work when spike_clusters != spike_templates | 11 May 2020, 22:49:10 UTC |
| ddd7602 | Josh Siegle | 06 March 2020, 23:09:41 UTC | Merge pull request #48 from DanBenHa/fix_silhouette_score_pc fix PC feature concatenation in silhouette score | 06 March 2020, 23:09:41 UTC |
| 7d93891 | Daniel Hähnke | 06 March 2020, 08:52:39 UTC | fix PC feature concatenation in silhouette score Fixes #47 | 06 March 2020, 08:52:39 UTC |
| bac23bd | Josh Siegle | 16 January 2020, 23:52:24 UTC | Rewrite get_unit_pcs method | 16 January 2020, 23:52:24 UTC |
| e62b232 | Josh Siegle | 11 January 2020, 01:29:33 UTC | Update code for case when spike_templates != spike_clusters | 11 January 2020, 01:29:33 UTC |
| 0643bfd | Josh Siegle | 11 December 2019, 00:12:13 UTC | Lock marshmallow to v2.19.2 | 11 December 2019, 00:12:13 UTC |
| a073e3b | Josh Siegle | 10 December 2019, 23:59:09 UTC | Switch output to kilosort_output_directory | 10 December 2019, 23:59:09 UTC |
| 442c00e | Josh Siegle | 10 December 2019, 23:36:26 UTC | Add import to metrics.py | 10 December 2019, 23:36:26 UTC |
| fa0dcf7 | Josh Siegle | 09 December 2019, 19:51:16 UTC | Update noise_templates README | 09 December 2019, 19:51:16 UTC |
| c906441 | Josh Siegle | 09 December 2019, 19:25:33 UTC | Use pillow version 6.2.0 or higher | 09 December 2019, 19:25:33 UTC |
| 8cd321f | Josh Siegle | 09 December 2019, 19:21:09 UTC | Fix bug in silhouette score calculation | 09 December 2019, 19:21:09 UTC |
| 5d646a9 | Josh Siegle | 24 October 2019, 17:22:17 UTC | Merge branch 'master' of https://github.com/AllenInstitute/ecephys_spike_sorting | 24 October 2019, 17:22:17 UTC |
| 3bce70f | Josh Siegle | 24 October 2019, 17:22:06 UTC | EGM edits (to depth_estimation) on NP4 | 24 October 2019, 17:22:06 UTC |
| d0d99ec | Josh Siegle | 17 October 2019, 02:19:36 UTC | Merge pull request #43 from mmyros/silhouette_score_fix The variable silhouette_score shadows import | 17 October 2019, 02:19:36 UTC |
| c5bd49f | max | 16 October 2019, 19:27:02 UTC | The variable silhouette_score shadows from sklearn.metrics import silhouette_score and causes problems for me. Can we rename it to the_silhouette_score or something similar? | 16 October 2019, 19:27:02 UTC |
| f21ecba | Josh Siegle | 27 August 2019, 23:28:41 UTC | Change to version 0.2 | 27 August 2019, 23:28:41 UTC |
| 79c2598 | Josh Siegle | 26 August 2019, 01:49:30 UTC | Add comma | 26 August 2019, 01:49:30 UTC |
| bd62fb5 | Josh Siegle | 26 August 2019, 01:49:04 UTC | Move parameters to schema file | 26 August 2019, 01:49:04 UTC |
| 06b8ea1 | Josh Siegle | 25 August 2019, 23:46:37 UTC | Add template shape check | 25 August 2019, 23:46:37 UTC |
| 36ea9e8 | Josh Siegle | 25 August 2019, 00:48:57 UTC | Set up framework for noise template classifier | 25 August 2019, 00:48:57 UTC |
| 643e8e5 | Josh Siegle | 21 August 2019, 00:41:57 UTC | Change color of asymmetric units | 21 August 2019, 00:41:57 UTC |
| 97f3177 | Josh Siegle | 21 August 2019, 00:29:22 UTC | Save after every update | 21 August 2019, 00:29:22 UTC |
| 758155a | Josh Siegle | 09 August 2019, 21:36:24 UTC | Copy pc_features before changing its size | 09 August 2019, 21:36:24 UTC |
| 32ff79c | Josh Siegle | 29 July 2019, 22:30:35 UTC | update categories on template classifier app | 29 July 2019, 22:30:35 UTC |
| 3855129 | Josh Siegle | 25 July 2019, 19:29:55 UTC | Update batch plotting | 25 July 2019, 19:29:55 UTC |
| a61c708 | Josh Siegle | 11 July 2019, 23:36:26 UTC | Change name of metrics output file | 11 July 2019, 23:36:26 UTC |
| 1787713 | Josh Siegle | 11 July 2019, 23:35:53 UTC | Merge branch 'master' of https://github.com/alleninstitute/ecephys_spike_sorting | 11 July 2019, 23:35:53 UTC |
| fbd955e | Josh Siegle | 11 July 2019, 23:35:41 UTC | Update create_input_json | 11 July 2019, 23:35:41 UTC |
| 6cd72ff | Josh Siegle | 11 July 2019, 23:34:48 UTC | Fix PC indexing bug | 11 July 2019, 23:34:48 UTC |
| 3406ae4 | Josh Siegle | 02 July 2019, 19:06:09 UTC | Change spikes per epoch to 1000 for mean waveforms | 02 July 2019, 19:06:09 UTC |
| bfee7bc | Josh Siegle | 02 July 2019, 17:51:40 UTC | Merge branch 'master' of https://github.com/AllenInstitute/ecephys_spike_sorting | 02 July 2019, 17:51:40 UTC |
| f545acf | Josh Siegle | 02 July 2019, 17:51:38 UTC | Add batch processing script | 02 July 2019, 17:51:38 UTC |
| 8d5dcaa | Josh Siegle | 02 July 2019, 16:12:18 UTC | Update batch plotting script | 02 July 2019, 16:12:18 UTC |
| 77ed068 | Josh Siegle | 02 July 2019, 00:26:46 UTC | fixed batch_processing conflicts | 02 July 2019, 00:26:46 UTC |
| 0e234d7 | Josh Siegle | 02 July 2019, 00:20:47 UTC | edits to scripts on NP4 | 02 July 2019, 00:20:47 UTC |
| da8eefc | Josh Siegle | 01 July 2019, 22:08:14 UTC | Merge branch 'master' of https://github.com/alleninstitute/ecephys_spike_sorting | 01 July 2019, 22:08:14 UTC |
| b5ed6bb | Josh Siegle | 01 July 2019, 22:07:41 UTC | Update hotkeys for template classifier app | 01 July 2019, 22:07:41 UTC |
| e2bf7d0 | Josh Siegle | 28 June 2019, 23:47:55 UTC | Merge branch 'master' of https://github.com/AllenInstitute/ecephys_spike_sorting | 28 June 2019, 23:47:55 UTC |
| 8629d0f | Josh Siegle | 28 June 2019, 23:47:52 UTC | Add batch plotting script | 28 June 2019, 23:47:52 UTC |
| 9642b82 | Josh Siegle | 28 June 2019, 23:46:45 UTC | Merge branch 'master' of https://github.com/alleninstitute/ecephys_spike_sorting | 28 June 2019, 23:46:45 UTC |
| 726cc15 | Josh Siegle | 28 June 2019, 23:46:17 UTC | Changes on NP.1 | 28 June 2019, 23:46:17 UTC |
| 41db3c3 | Josh Siegle | 28 June 2019, 23:42:13 UTC | Merge branch 'master' of https://github.com/AllenInstitute/ecephys_spike_sorting | 28 June 2019, 23:42:13 UTC |
| a5736b1 | Josh Siegle | 28 June 2019, 23:41:58 UTC | Updates on NP.1 | 28 June 2019, 23:41:58 UTC |
| 0ca52b1 | Josh Siegle | 28 June 2019, 23:28:17 UTC | Update README for quality metrics | 28 June 2019, 23:28:17 UTC |
| 741e02f | Josh Siegle | 28 June 2019, 23:22:18 UTC | Update metrics.py | 28 June 2019, 23:22:18 UTC |
| fb6b330 | Josh Siegle | 28 June 2019, 21:05:17 UTC | Merge branch 'master' of https://github.com/alleninstitute/ecephys_spike_sorting | 28 June 2019, 21:05:17 UTC |
| 01ec307 | Josh Siegle | 28 June 2019, 21:05:09 UTC | Fix typo | 28 June 2019, 21:05:09 UTC |
| 0fac476 | Josh Siegle | 28 June 2019, 21:00:13 UTC | Update depth estimation params | 28 June 2019, 21:00:13 UTC |
| 95fad93 | Josh Siegle | 28 June 2019, 20:56:17 UTC | Add new batch processing script | 28 June 2019, 20:56:17 UTC |
| 2c6b175 | Josh Siegle | 28 June 2019, 20:42:32 UTC | Merge branch 'master' of https://github.com/AllenInstitute/ecephys_spike_sorting | 28 June 2019, 20:42:32 UTC |
| db43dfc | Josh Siegle | 28 June 2019, 20:42:29 UTC | Update create_input_json | 28 June 2019, 20:42:29 UTC |
| 9061bef | Josh Siegle | 28 June 2019, 20:13:04 UTC | Add initial implementation of drift metrics; closes #36 | 28 June 2019, 20:13:04 UTC |
| 6ce07eb | Josh Siegle | 28 June 2019, 00:20:05 UTC | Merge waveform metrics into quality metrics file, if available | 28 June 2019, 00:20:05 UTC |
| f2b378a | Josh Siegle | 27 June 2019, 23:00:18 UTC | depth_estimation module runs again | 27 June 2019, 23:00:18 UTC |
| e51eb30 | Josh Siegle | 27 June 2019, 22:27:30 UTC | Fix merge conflict | 27 June 2019, 22:27:30 UTC |
| 6d9c9de | Josh Siegle | 27 June 2019, 22:26:26 UTC | Refactor depth estimation module (untested) | 27 June 2019, 22:26:26 UTC |
| f8acb0d | Josh Siegle | 27 June 2019, 20:12:04 UTC | Add check for LFP channel reordering in depth_estimation module | 27 June 2019, 20:12:04 UTC |
| b152554 | Josh Siegle | 27 June 2019, 19:37:39 UTC | Add code for full probe t-sne plots | 27 June 2019, 19:37:39 UTC |
| 0d0b9e5 | Josh Siegle | 27 June 2019, 17:47:29 UTC | Make sure plots get closed after saving | 27 June 2019, 17:47:29 UTC |
| 67a83c6 | Josh Siegle | 27 June 2019, 16:52:40 UTC | Add batch processing file for remote data loading | 27 June 2019, 16:52:40 UTC |
| 5e0bdb8 | Josh Siegle | 27 June 2019, 16:52:03 UTC | Update kilosort_helper to work with remote files Now the original data file doesn't have to be local (althoughtemp_wh.dat should be). | 27 June 2019, 16:52:03 UTC |
| e1b0eb9 | Josh Siegle | 26 June 2019, 22:10:35 UTC | Merge branch 'master' of https://github.com/alleninstitute/ecephys_spike_sorting | 26 June 2019, 22:10:35 UTC |
| 3fee8c2 | Josh Siegle | 26 June 2019, 22:09:33 UTC | Add raw data visualization | 26 June 2019, 22:09:33 UTC |
| 4d64938 | Josh Siegle | 26 June 2019, 20:30:30 UTC | Add ks template plot | 26 June 2019, 20:30:30 UTC |
| ec7051e | Josh Siegle | 26 June 2019, 19:04:21 UTC | Add driftmap code | 26 June 2019, 19:04:21 UTC |
| 9bdc18d | Josh Siegle | 25 June 2019, 22:21:21 UTC | Merge pull request #38 from AllenInstitute/37/ks_postprocessing Add spike_templates to load_kilosort_data | 25 June 2019, 22:21:21 UTC |
| 90eeb60 | Josh Siegle | 25 June 2019, 22:15:31 UTC | Add spike_templates to load_kilosort_data and remove appended _r from kilosort_postprocessing output files | 25 June 2019, 22:15:31 UTC |
| 080a951 | Josh Siegle | 19 June 2019, 00:47:36 UTC | Fix typo in batch_processing.py | 19 June 2019, 00:47:36 UTC |
| 5d96203 | Josh Siegle | 19 June 2019, 00:33:46 UTC | Remove local processing file | 19 June 2019, 00:33:46 UTC |
| 3a03ce1 | Josh Siegle | 19 June 2019, 00:32:45 UTC | Merge branch 'master' of https://github.com/alleninstitute/ecephys_spike_sorting | 19 June 2019, 00:32:45 UTC |
