| 9acdaf5 | Prashant Pandey | 06 November 2018, 17:42:52 UTC | Merge branch 'refactoring_new_cli' of github.com:splatlab/squeakr into refactoring_new_cli | 06 November 2018, 17:42:52 UTC |
| eaad699 | Prashant Pandey | 06 November 2018, 16:29:10 UTC | more on README. | 06 November 2018, 17:42:13 UTC |
| 8ebaff7 | Prashant Pandey | 06 November 2018, 16:29:10 UTC | more on README. | 06 November 2018, 16:29:10 UTC |
| a401367 | Prashant Pandey | 06 November 2018, 16:28:13 UTC | more on README. | 06 November 2018, 16:28:13 UTC |
| 1d166e1 | Prashant Pandey | 06 November 2018, 16:24:51 UTC | more on README. | 06 November 2018, 16:24:51 UTC |
| f1a8ced | Prashant Pandey | 06 November 2018, 16:05:18 UTC | minor error log change. | 06 November 2018, 16:05:18 UTC |
| 83df47e | Prashant Pandey | 06 November 2018, 15:57:00 UTC | Updating README. | 06 November 2018, 15:57:00 UTC |
| d7fd93e | Prashant Pandey | 06 November 2018, 15:46:09 UTC | Updating README. | 06 November 2018, 15:46:09 UTC |
| a315fe3 | Prashant Pandey | 01 November 2018, 21:17:29 UTC | minor fix in filtering.. | 01 November 2018, 21:17:29 UTC |
| 9bea05f | Prashant Pandey | 01 November 2018, 20:43:41 UTC | removing a dangling cout.. | 01 November 2018, 20:43:41 UTC |
| ad17e0a | Prashant Pandey | 01 November 2018, 20:39:36 UTC | minor fix in filtering code for no counts.. | 01 November 2018, 20:39:36 UTC |
| e8b9aa9 | Rob Patro | 01 November 2018, 15:16:09 UTC | Update reader.h Change default `part_size` | 01 November 2018, 15:16:09 UTC |
| 797f838 | Rob Patro | 01 November 2018, 15:15:39 UTC | Update count.cc | 01 November 2018, 15:15:39 UTC |
| 3adf630 | Rob Patro | 01 November 2018, 15:14:57 UTC | Update gqf_cpp.h fix return type for range() | 01 November 2018, 15:14:57 UTC |
| 52c8384 | Prashant Pandey | 08 October 2018, 16:49:23 UTC | Merge branch 'refactoring_new_cli' of github.com:splatlab/squeakr into refactoring_new_cli | 08 October 2018, 16:49:23 UTC |
| e55f450 | Prashant Pandey | 08 October 2018, 16:49:17 UTC | Fixing a k-mer parsing corner case when N is the last base of the read. | 08 October 2018, 16:49:17 UTC |
| 0bec58e | Prashant Pandey | 16 September 2018, 22:21:34 UTC | Changing open flag in qf_usefile. | 16 September 2018, 22:21:34 UTC |
| 56bf8a4 | Prashant Pandey | 13 September 2018, 23:45:54 UTC | minor gqf file fix porting. | 13 September 2018, 23:45:54 UTC |
| 3f7c4f6 | Prashant Pandey | 18 August 2018, 02:05:41 UTC | Porting CQF changes in the initfile and usefile API. | 18 August 2018, 02:05:41 UTC |
| 2b9f036 | Prashant Pandey | 13 August 2018, 22:49:18 UTC | updating todo. | 13 August 2018, 22:49:18 UTC |
| 000ef16 | Prashant Pandey | 13 August 2018, 18:00:02 UTC | Adding info command to Squeakr. | 13 August 2018, 18:00:02 UTC |
| a509af4 | Prashant Pandey | 11 August 2018, 06:55:26 UTC | minor changes. | 11 August 2018, 06:55:26 UTC |
| 9c48515 | Prashant Pandey | 10 August 2018, 20:28:45 UTC | minor | 10 August 2018, 20:28:45 UTC |
| 28b68af | Prashant Pandey | 10 August 2018, 19:40:21 UTC | minor bug in testing. | 10 August 2018, 19:40:21 UTC |
| ba9e500 | Prashant Pandey | 10 August 2018, 18:18:21 UTC | fixing minor resize bug. | 10 August 2018, 18:18:21 UTC |
| c8b7f7b | Prashant Pandey | 08 August 2018, 23:47:41 UTC | Fixing resizing issue. | 08 August 2018, 23:47:41 UTC |
| 7bbb6ee | Prashant Pandey | 08 August 2018, 05:23:19 UTC | minor resizing changes. | 08 August 2018, 05:23:19 UTC |
| e15c583 | Prashant Pandey | 07 August 2018, 18:50:02 UTC | partial argument check for auto resizing. | 07 August 2018, 18:50:02 UTC |
| 24737c4 | Prashant Pandey | 02 August 2018, 19:55:32 UTC | Porting updated code from CQF. | 02 August 2018, 19:55:32 UTC |
| 0d506fc | Prashant Pandey | 01 August 2018, 22:41:28 UTC | Removing metadata updates in the CQF code. | 01 August 2018, 22:41:28 UTC |
| 9392eaa | Prashant Pandey | 01 August 2018, 03:46:24 UTC | 1. Porting latest CQF code. 2.Fixing some commands issues from the todo file. 3. Fixing author blocks. | 01 August 2018, 03:46:24 UTC |
| 97e1d99 | Rob Johnson | 31 July 2018, 23:05:09 UTC | todo | 31 July 2018, 23:05:09 UTC |
| 9845a02 | Prashant Pandey | 26 July 2018, 22:23:24 UTC | Adding config file. | 26 July 2018, 22:23:24 UTC |
| a6e1560 | Prashant Pandey | 26 July 2018, 01:32:34 UTC | Adding a version number in squeakr config. | 26 July 2018, 01:32:34 UTC |
| 18edf83 | Prashant Pandey | 26 July 2018, 00:27:13 UTC | Ported code from the CQF. Adding cutoff and no-count argument. Estimation works properly. | 26 July 2018, 00:27:13 UTC |
| 1042510 | Prashant Pandey | 25 July 2018, 07:20:21 UTC | Estimation code working. | 25 July 2018, 07:20:21 UTC |
| efe3b64 | Prashant Pandey | 24 July 2018, 00:59:19 UTC | Updating make clean to remove the object dir. | 24 July 2018, 00:59:19 UTC |
| fbc81b7 | Prashant Pandey | 23 July 2018, 22:38:43 UTC | Ported latest CQF API. Tested on the sample data set. | 23 July 2018, 22:38:43 UTC |
| 5f2ff63 | Prashant Pandey | 17 July 2018, 18:21:11 UTC | Partial commit | 17 July 2018, 18:21:11 UTC |
| 8918f96 | Prashant Pandey | 14 July 2018, 06:49:08 UTC | tested query and listing. | 14 July 2018, 06:49:08 UTC |
| 3113ae8 | Prashant Pandey | 14 July 2018, 06:40:26 UTC | 1. Removing warning flags. 2. Adding cutoff. | 14 July 2018, 06:40:26 UTC |
| 5424c50 | Prashant Pandey | 26 June 2018, 01:11:06 UTC | Removing unwanted code. | 26 June 2018, 01:11:06 UTC |
| 3c95ad4 | Prashant Pandey | 26 June 2018, 00:42:26 UTC | Adding cutoff argument. | 26 June 2018, 00:42:26 UTC |
| 48a4145 | Prashant Pandey | 26 June 2018, 00:41:55 UTC | Adding cutoff argument. | 26 June 2018, 00:41:55 UTC |
| 55f0f3f | Prashant Pandey | 26 June 2018, 00:35:27 UTC | fixing a small bug in k-mer parsing. | 26 June 2018, 00:35:27 UTC |
| 6780878 | Prashant Pandey | 26 June 2018, 00:03:03 UTC | Adding code for write k-mer size at the end of the file. | 26 June 2018, 00:03:03 UTC |
| 19748c0 | Prashant Pandey | 25 June 2018, 22:22:42 UTC | Adding listing k-mers during query. | 25 June 2018, 22:22:42 UTC |
| 7438802 | Prashant Pandey | 25 June 2018, 21:32:45 UTC | fixing list API. | 25 June 2018, 21:32:45 UTC |
| 79d8bfa | Prashant Pandey | 25 June 2018, 21:28:18 UTC | some more fixes in the CLI | 25 June 2018, 21:28:18 UTC |
| 03aee16 | Prashant Pandey | 25 June 2018, 21:26:09 UTC | some more fixes in the CLI | 25 June 2018, 21:26:09 UTC |
| 64161f1 | Prashant Pandey | 02 June 2018, 01:08:33 UTC | Tested listing kmers. | 02 June 2018, 01:08:33 UTC |
| 8d7a80f | Prashant Pandey | 02 June 2018, 00:02:56 UTC | Minor bug. | 02 June 2018, 00:02:56 UTC |
| 9b9b095 | Prashant Pandey | 02 June 2018, 00:00:48 UTC | Changed query API. | 02 June 2018, 00:00:48 UTC |
| cbbf9df | Prashant Pandey | 01 June 2018, 06:25:18 UTC | Adding logger to time. | 01 June 2018, 06:25:18 UTC |
| 3a74eae | Prashant Pandey | 01 June 2018, 06:23:53 UTC | Adding logger to time. | 01 June 2018, 06:23:53 UTC |
| 61cfa12 | Prashant Pandey | 01 June 2018, 06:17:12 UTC | Adding console logging to other files. | 01 June 2018, 06:17:12 UTC |
| 604dc85 | Prashant Pandey | 01 June 2018, 06:10:07 UTC | Using logger to log. | 01 June 2018, 06:10:07 UTC |
| a072e10 | Prashant Pandey | 31 May 2018, 17:13:14 UTC | Removed auto resize. | 31 May 2018, 17:13:14 UTC |
| 4ab19dc | Prashant Pandey | 31 May 2018, 00:49:57 UTC | Making size and threads optional. | 31 May 2018, 00:49:57 UTC |
| 245fda6 | Prashant Pandey | 30 May 2018, 22:45:32 UTC | Test counting. | 30 May 2018, 22:45:32 UTC |
| 4ea7f50 | Prashant Pandey | 30 May 2018, 20:29:40 UTC | Testing counting now. | 30 May 2018, 20:29:40 UTC |
| 8496787 | Prashant Pandey | 30 May 2018, 19:52:58 UTC | More refactoring. Code compiles now. | 30 May 2018, 19:52:58 UTC |
| 333702c | Prashant Pandey | 30 May 2018, 06:21:36 UTC | More refactoring. Getting closer. | 30 May 2018, 06:21:36 UTC |
| 35325d2 | Prashant Pandey | 29 May 2018, 22:35:39 UTC | More refactoring. Getting closer. | 29 May 2018, 22:35:39 UTC |
| db42e05 | Prashant Pandey | 11 May 2018, 19:34:35 UTC | checking in intermediate code. | 11 May 2018, 19:34:35 UTC |
| a486bf4 | rtjohnso | 02 March 2018, 20:52:51 UTC | Merge pull request #28 from sjackman/patch-1 qf_serialize: Add the filename to the error message | 02 March 2018, 20:52:51 UTC |
| dee0459 | Shaun Jackman | 27 February 2018, 16:56:18 UTC | qf_serialize: Add filename to error message | 27 February 2018, 16:59:24 UTC |
| 6507097 | Prashant Pandey | 25 January 2018, 18:55:54 UTC | Adding instructions to use the script to calculate the log of the number of slots. | 25 January 2018, 18:55:54 UTC |
| 63d06de | Prashant Pandey | 25 January 2018, 18:51:34 UTC | Adding the script to estmiate the size of the CQF using the output from ntCard. | 25 January 2018, 18:51:34 UTC |
| 6741efd | Rob Patro | 07 December 2017, 15:38:02 UTC | update clipp | 07 December 2017, 15:38:02 UTC |
| 29a8ee5 | Rob Patro | 05 December 2017, 18:38:02 UTC | update clipp | 05 December 2017, 18:38:02 UTC |
| 0217339 | Prashant Pandey | 30 November 2017, 16:38:46 UTC | Updating README. | 30 November 2017, 16:38:46 UTC |
| 27e9b49 | Prashant Pandey | 30 November 2017, 16:33:39 UTC | Fixing a minor bug in inner product CLI. | 30 November 2017, 16:33:39 UTC |
| c9dca4b | Prashant Pandey | 30 November 2017, 16:25:46 UTC | Addig CLI interface to other two commands. | 30 November 2017, 16:25:46 UTC |
| 4ca288b | Rob Patro | 18 November 2017, 19:42:55 UTC | Update README.md | 18 November 2017, 19:42:55 UTC |
| 20c699c | Prashant Pandey | 18 November 2017, 06:18:41 UTC | Work with the new CLI | 18 November 2017, 06:18:41 UTC |
| 01aa926 | rob-p | 17 November 2017, 03:28:08 UTC | merge | 17 November 2017, 03:28:08 UTC |
| 6799ad0 | rob-p | 17 November 2017, 03:26:51 UTC | prepare for merge with newest features | 17 November 2017, 03:26:51 UTC |
| c860bbf | Prashant Pandey | 17 November 2017, 02:47:51 UTC | Adding code to pass a prefix as an argument. | 17 November 2017, 02:47:51 UTC |
| 7d813e6 | rob-p | 17 November 2017, 02:45:29 UTC | fix merge | 17 November 2017, 02:45:29 UTC |
| 277bca0 | rob-p | 17 November 2017, 02:44:58 UTC | add named paramaters to squeakr-count | 17 November 2017, 02:44:58 UTC |
| 8382a7b | Prashant Pandey | 17 November 2017, 02:28:13 UTC | Fixing a bug in naming the file. | 17 November 2017, 02:28:13 UTC |
| 74f4455 | Prashant Pandey | 16 November 2017, 19:17:05 UTC | Merge branch 'development' of github.com:splatlab/squeakr into development | 16 November 2017, 19:17:05 UTC |
| aa47530 | Prashant Pandey | 16 November 2017, 19:16:49 UTC | Adding scripts for merging. | 16 November 2017, 19:16:49 UTC |
| 4601cfd | Prashant Pandey | 16 November 2017, 19:12:11 UTC | Updating README. | 16 November 2017, 19:12:11 UTC |
| 63f6d76 | Prashant Pandey | 16 November 2017, 19:10:30 UTC | Adding code for enabling users to specify the k-mer size as in input parameter. | 16 November 2017, 19:10:30 UTC |
| 060ab36 | Prashant Pandey | 14 November 2017, 18:47:46 UTC | Merge branch 'master' of github.com:splatlab/squeakr | 14 November 2017, 18:47:46 UTC |
| 0c2ffe4 | Prashant Pandey | 14 November 2017, 18:47:40 UTC | Using the same seed for the hash function in every run. | 14 November 2017, 18:47:40 UTC |
| 2e7916c | Prashant Pandey | 09 November 2017, 17:24:36 UTC | Update README.md | 09 November 2017, 17:24:36 UTC |
| 818a7bf | Prashant Pandey | 09 November 2017, 17:22:23 UTC | Update README.md | 09 November 2017, 17:22:23 UTC |
| e858595 | Prashant Pandey | 04 November 2017, 00:19:37 UTC | Moving a comment from gqf.c to the header file where it belongs. | 04 November 2017, 00:19:37 UTC |
| 0b1a790 | Prashant Pandey | 04 November 2017, 00:16:01 UTC | Removing SSL dependency. | 04 November 2017, 00:16:01 UTC |
| f1e877d | Prashant Pandey | 31 October 2017, 00:26:50 UTC | Fixing a minor bug when you write a CQF to using qf_serialize and read it back using qf_read. | 31 October 2017, 00:26:50 UTC |
| 2e1af52 | Prashant Pandey | 19 September 2017, 01:54:14 UTC | Removed call to fallocate to preallocate space of the file on disk. | 19 September 2017, 01:54:14 UTC |
| 59c6f27 | Prashant Pandey | 18 September 2017, 16:16:27 UTC | Minor README tweaks. | 18 September 2017, 16:16:27 UTC |
| 55ee912 | Prashant Pandey | 18 September 2017, 04:21:31 UTC | Updating Makefile to append flags to CXX and LD instead of overwriting them. | 18 September 2017, 04:21:31 UTC |
| d7c2b5c | Prashant Pandey | 18 September 2017, 00:07:54 UTC | Adding help option and updating executable names. | 18 September 2017, 00:07:54 UTC |
| 83e47ce | Prashant Pandey | 08 September 2017, 20:57:21 UTC | Fixing a bug in the thread-safe CQF code. Also, updating the README with instructions about the query API. | 08 September 2017, 20:57:21 UTC |
| ed9b52e | Prashant Pandey | 08 September 2017, 20:56:43 UTC | Merge branch 'master' of github.com:splatlab/squeakr | 08 September 2017, 20:56:43 UTC |
| 5853609 | Prashant Pandey | 08 September 2017, 20:56:21 UTC | Fixing a bug in the thread-safe CQF code. Also, updating the README with instructions about the query API. | 08 September 2017, 20:56:21 UTC |
