https://github.com/connor-lab/ncov2019-artic-nf
Revision 9f3f9fac98f4307d56f63c587b64116d69b094b2 authored by Matt Bull on 19 March 2020, 19:16:17 UTC, committed by Matt Bull on 19 March 2020, 19:16:17 UTC
1 parent 50f561d
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Tip revision: 9f3f9fac98f4307d56f63c587b64116d69b094b2 authored by Matt Bull on 19 March 2020, 19:16:17 UTC
Add an illumina bam/consensus workflow using iVar
Tip revision: 9f3f9fa
environment-illumina.yml
name: artic-ncov2019-illumina
channels:
  - conda-forge
  - bioconda
  - defaults
dependencies:
  - python=3
  - bwa=0.7.17=pl5.22.0_2
  - samtools=1.9
  - trim-galore=0.6.5
  - ivar=1.0.1
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