https://github.com/yaml2sbml-dev/yaml2sbml
Revision a215bb534c7b13a931c6b020d50b822d0b080b4b authored by Jakob Vanhoefer on 25 January 2021, 15:31:52 UTC, committed by GitHub on 25 January 2021, 15:31:52 UTC
Co-authored-by: Dilan Pathirana <59329744+dilpath@users.noreply.github.com>
1 parent a8f946d
Tip revision: a215bb534c7b13a931c6b020d50b822d0b080b4b authored by Jakob Vanhoefer on 25 January 2021, 15:31:52 UTC
Update doc/examples/Lotka_Volterra_Model_Editor/Lotka_Volterra_Model_Editor.ipynb
Update doc/examples/Lotka_Volterra_Model_Editor/Lotka_Volterra_Model_Editor.ipynb
Tip revision: a215bb5
.gitignore
__pycache__/
.idea/
# files generated by tests
yaml2sbml/tests/test_yaml2sbml/sbml_test.xml
### Files generated when running the notebooks (AMICI + PEtab files)
## Lotka Volterra Python
./doc/examples/Lotka_Volterra_python/amici_models
./doc/examples/Lotka_Volterra_python/amici_models/*
./doc/examples/Lotka_Volterra_python/Lotka_Volterra_AMICI
./doc/examples/Lotka_Volterra_python/Lotka_Volterra_AMICI/*
./doc/examples/Lotka_Volterra_python/Lotka_Volterra_basic.xml
./doc/examples/Lotka_Volterra_python/Lotka_Volterra_PEtab/*
!./doc/examples/Lotka_Volterra_python/Lotka_Volterra_PEtab/measurement_table.tsv
## Lotka Volterra CLI
./doc/examples/Lotka_Volterra_CLI/Lotka_Volterra_PEtab/*
./doc/examples/Lotka_Volterra_CLI/Lotka_Volterra_PEtab.yml
./doc/examples/Lotka_Volterra_CLI/Lotka_Volterra_PEtab/*.xml
## Lotka Volterra Model Editor
./doc/examples/Lotka_Volterra_Model_Editor/*.yaml
./doc/examples/Lotka_Volterra_Model_Editor/*.xml
./doc/examples/Lotka_Volterra_Model_Editor/Lotka_Volterra_PEtab
## Format Features
./doc/examples/Format_Features/__pycache__
./doc/examples/Format_Features/AMICI_models
./doc/examples/Format_Features/*.xml
### JupyterNotebooks ###
# gitignore template for Jupyter Notebooks
# website: http://jupyter.org/
.ipynb_checkpoints
*/.ipynb_checkpoints/*
# IPython
profile_default/
ipython_config.py
# Remove previous ipynb_checkpoints
# git rm -r .ipynb_checkpoints/
### macOS ###
# General
.DS_Store
.AppleDouble
.LSOverride
# Icon must end with two \r
Icon
# Thumbnails
._*
# Files that might appear in the root of a volume
.DocumentRevisions-V100
.fseventsd
.Spotlight-V100
.TemporaryItems
.Trashes
.VolumeIcon.icns
.com.apple.timemachine.donotpresent
# Directories potentially created on remote AFP share
.AppleDB
.AppleDesktop
Network Trash Folder
Temporary Items
.apdisk
### PyCharm ###
# Covers JetBrains IDEs: IntelliJ, RubyMine, PhpStorm, AppCode, PyCharm, CLion, Android Studio, WebStorm and Rider
# Reference: https://intellij-support.jetbrains.com/hc/en-us/articles/206544839
# User-specific stuff
.idea/**/workspace.xml
.idea/**/tasks.xml
.idea/**/usage.statistics.xml
.idea/**/dictionaries
.idea/**/shelf
# Generated files
.idea/**/contentModel.xml
# Sensitive or high-churn files
.idea/**/dataSources/
.idea/**/dataSources.ids
.idea/**/dataSources.local.xml
.idea/**/sqlDataSources.xml
.idea/**/dynamic.xml
.idea/**/uiDesigner.xml
.idea/**/dbnavigator.xml
# Gradle
.idea/**/gradle.xml
.idea/**/libraries
# Gradle and Maven with auto-import
# When using Gradle or Maven with auto-import, you should exclude module files,
# since they will be recreated, and may cause churn. Uncomment if using
# auto-import.
# .idea/artifacts
# .idea/compiler.xml
# .idea/jarRepositories.xml
# .idea/modules.xml
# .idea/*.iml
# .idea/modules
# *.iml
# *.ipr
# CMake
cmake-build-*/
# Mongo Explorer plugin
.idea/**/mongoSettings.xml
# File-based project format
*.iws
# IntelliJ
out/
# mpeltonen/sbt-idea plugin
.idea_modules/
# JIRA plugin
atlassian-ide-plugin.xml
# Cursive Clojure plugin
.idea/replstate.xml
# Crashlytics plugin (for Android Studio and IntelliJ)
com_crashlytics_export_strings.xml
crashlytics.properties
crashlytics-build.properties
fabric.properties
# Editor-based Rest Client
.idea/httpRequests
# Android studio 3.1+ serialized cache file
.idea/caches/build_file_checksums.ser
### PyCharm Patch ###
# Comment Reason: https://github.com/joeblau/gitignore.io/issues/186#issuecomment-215987721
# *.iml
# modules.xml
# .idea/misc.xml
# *.ipr
# Sonarlint plugin
# https://plugins.jetbrains.com/plugin/7973-sonarlint
.idea/**/sonarlint/
# SonarQube Plugin
# https://plugins.jetbrains.com/plugin/7238-sonarqube-community-plugin
.idea/**/sonarIssues.xml
# Markdown Navigator plugin
# https://plugins.jetbrains.com/plugin/7896-markdown-navigator-enhanced
.idea/**/markdown-navigator.xml
.idea/**/markdown-navigator-enh.xml
.idea/**/markdown-navigator/
# Cache file creation bug
# See https://youtrack.jetbrains.com/issue/JBR-2257
.idea/$CACHE_FILE$
# CodeStream plugin
# https://plugins.jetbrains.com/plugin/12206-codestream
.idea/codestream.xml
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