https://github.com/ViennaRNA/ViennaRNA
Revision a4584fb1356656288e62cdc1ffd1bdc3785c124e authored by Ronny Lorenz on 13 November 2017, 14:11:52 UTC, committed by Ronny Lorenz on 13 November 2017, 16:42:52 UTC
1 parent 6c15ca8
Tip revision: a4584fb1356656288e62cdc1ffd1bdc3785c124e authored by Ronny Lorenz on 13 November 2017, 14:11:52 UTC
Prepare for release v2.4.3
Prepare for release v2.4.3
Tip revision: a4584fb
ViennaRNA-homepage.cfg
\Preamble{xhtml}
% We don't want to translate font suggestions with ugly wrappers like
% <span class="cmti-10"> for italic text
\NoFonts
% Don't output xml version tag
\Configure{VERSION}{}
\Configure{PROLOG}{DOCTYPE}
% Output HTML5 doctype instead of the default for HTML4
\Configure{DOCTYPE}{\HCode{<!doctype html>\Hnewline}}
% Custom page opening
\Configure{HTML}{\HCode{<html lang="en">\Hnewline}}{\HCode{\Hnewline</html>}}
% Set custom page title
\Configure{TITLE+}{ViennaRNA Tutorial}
% Reset <head>, aka delete all default boilerplate
%\Configure{@HEAD}{}
% Setup custom <head> content
\Configure{@HEAD}{
\HCode{
<link href="../css/bootstrap.min.css" rel="stylesheet" />\Hnewline
<link href="../css/bootstrap-theme.min.css" rel="stylesheet" />\Hnewline
<link href="../css/tbi_bootstrap.css" rel="stylesheet" />\Hnewline
<link href="../css/tbi_mod.css" rel="stylesheet" />\Hnewline
}
}
\Configure{@HEAD}{\HCode{<script type="text/javascript"\Hnewline
src="http://cdn.mathjax.org/mathjax/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML"\Hnewline
></script>\Hnewline}}
\Configure{@HEAD}{\HCode{<style type="text/css">\Hnewline
.MathJax_MathML {text-indent: 0;}\Hnewline
</style>\Hnewline}}
\Configure{BODY}{\Tg<body role="document">}{\Tg</body>}
\Configure{@BODY}{}
\Configure{@BODY}{\IgnorePar\HCode{
<div class="container wrap">\Hnewline
<div class="container headwrap">\Hnewline
<header class="hidden-xs">\Hnewline
<img class="unilogo" src="../gfx/base/unilogo_small.png" alt="Univiersity of Vienna"/>\Hnewline
<hgroup class="head-title-lg">\Hnewline
<div class="title-link-lg"><a href="http://www.tbi.univie.ac.at">Theoretical Biochemistry Group</a></div>\Hnewline
<div class="title-link-sm"><a href="http://www.itc.univie.ac.at">Institute for Theoretical Chemistry</a></div>\Hnewline
</hgroup>\Hnewline
</header>\Hnewline
<nav class="navbar navbar-default navbar-tbi navbar-tbi-main center" role="navigation">\Hnewline
<div class="container-fluid">\Hnewline
<div class="navbar-header">\Hnewline
<button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-target="\#navbar" aria-expanded="false" aria-controls="navbar">\Hnewline
<span class="sr-only">Toggle navigation</span>\Hnewline
<span class="icon-bar"></span>\Hnewline
<span class="icon-bar"></span>\Hnewline
<span class="icon-bar"></span>\Hnewline
</button>\Hnewline
<a class="navbar-brand visible-xs" href="/index.html"><img alt="TBI" height="24" src="../gfx/base/tbilogo.png"></a>\Hnewline
</div>\Hnewline
<div id="navbar" class="navbar-collapse collapse navbar-inner">\Hnewline
<ul class="nav navbar-nav navbar-tbi">\Hnewline
<li><a href="/index.html">TBI</a></li>\Hnewline
<li class="dropdown"><a href="\#" class="dropdown-toggle"\Hnewline
data-toggle="dropdown"\Hnewline
role="button"\Hnewline
aria-haspopup="true"\Hnewline
aria-expanded="false">RNA Software <span class="caret"></span></a>\Hnewline
<ul class="dropdown-menu">\Hnewline
<li><a href="../">ViennaRNA Package</a></li>\Hnewline
<li><a href="../Barriers">Barriers</a></li>\Hnewline
<li><a href="../Treekin">Treekin</a></li>\Hnewline
<li><a href="../bar_map">barMap</a></li>\Hnewline
<li><a href="../BHG">Basin Hopping Graph</a></li>\Hnewline
<li><a href="http://www.tbi.univie.ac.at/software/rnawolf/rnawolf.html">RNAwolf</a></li>\Hnewline
<li><a href="https://www.tbi.univie.ac.at/~wash/RNAz/">RNAz</a></li>\Hnewline
<li><a href="../Alidot">AliDot</a></li>\Hnewline
</ul>\Hnewline
</li>\Hnewline
<li><a href="../">ViennaRNA</a></li>\Hnewline
<li><a href="../documentation.html">Documentation</a></li>\Hnewline
<li class="selected"><a href="\#">Tutorial</a></li>\Hnewline
<li><a href="../changelog.html">Changelog</a></li>\Hnewline
</ul>\Hnewline
</div><!--/.nav-collapse -->\Hnewline
</div>\Hnewline
</nav>\Hnewline
</div>\Hnewline
<!-- Main Content Container -->\Hnewline
<div class="container contentwrap" role="main">\Hnewline
<div class="container-main">\Hnewline
<!-- BREADCRUMB BAR -->\Hnewline
<div class="row wai">\Hnewline
<div class="col-xs-12 col-sm-6 breadcrumbs">\Hnewline
<span class="caption">You are here:</span>\Hnewline
<ol class="breadcrumb">\Hnewline
<li><a href="/">TBI</a></li>\Hnewline
<li><a href="/software">Software</a></li>\Hnewline
<li><a href="../index.html">ViennaRNA</a></li>\Hnewline
<li class="active"><a href="tutorial.html">Tutorial</a></li>\Hnewline
</ol>\Hnewline
</div>\Hnewline
<div class="col-xs-12 col-sm-6 appearance">\Hnewline
<span class="caption">Font size: </span>\Hnewline
<a class="incfont" href="\#"><img src="../gfx/base/font_inc.gif" alt="Increase font size"></a>\Hnewline
<a class="decfont" href="\#"><img src="../gfx/base/font_dec.gif" alt="Decrease font size"></a>\Hnewline
<a class="highcontrast" href="\#"><img src="../gfx/base/contrast.gif" alt="Switch style sheet from default to highcontrast and back"></a>\Hnewline
</div>\Hnewline
</div><!-- /.row -->\Hnewline
<div class="row row-offcanvas row-offcanvas-right">\Hnewline
<div class="col-xs-12 col-sm-9">\Hnewline
<article>\Hnewline
<p class="pull-right visible-xs">\Hnewline
<button type="button" class="btn btn-primary btn-xs" data-toggle="offcanvas">Toggle sidebar</button>\Hnewline
</p>\Hnewline
}
}
\Configure{@/BODY}{
\HCode{\IgnorePar
</article>\Hnewline
</div><!-- /.row -->\Hnewline\Hnewline
<!-- SIDEBAR -->\Hnewline
<div class="col-xs-6 col-sm-3 sidebar-offcanvas" id="sidebar" role="navigation">\Hnewline\Hnewline
<aside>\Hnewline
<nav id="sidebarNav" role="navigation">\Hnewline
__SIDENAVLIST__\Hnewline
</nav>\Hnewline
</aside>\Hnewline
</div><!--/.sidebar-offcanvas-->\Hnewline
</div><!-- /.row-offcanvas -->\Hnewline
<div class="topwrap hidden"><a class="top hidden" href="\#">Top</a></div>\Hnewline
</div>\Hnewline
</div>\Hnewline
</div> <!-- /.wrap -->\Hnewline\Hnewline
<footer>\Hnewline
<p class="legalstuff">\Hnewline
<a href="/legal.html">Legal Details</a>\Hnewline
</p>\Hnewline
</footer>\Hnewline\Hnewline
<!-- Bootstrap core JavaScript\Hnewline
================================================== -->\Hnewline
<!-- Placed at the end of the document so the pages load faster -->\Hnewline\Hnewline
<!-- jQuery (necessary for Bootstrap's JavaScript plugins) -->\Hnewline
<script src="../js/jquery.min.js"></script>\Hnewline\Hnewline
<!-- Include all compiled plugins (below), or include individual files as needed -->\Hnewline
<script src="../js/bootstrap.min.js"></script>\Hnewline
<script src="../js/offcanvas.js"></script>\Hnewline\Hnewline
<script src="../js/jquery.cookie.js" type="text/javascript"></script>\Hnewline
<script src="../js/tbi_base.js" type="text/javascript"></script>\Hnewline
<script src="../js/tbi_bootstrap.js" type="text/javascript"></script>
}
}
% Translate \textbf, \textit, \texttt, and \emph directives into
% <b>, <em>, <code>, and <em>
\Configure{textbf}{\ifvmode\ShowPar\fi\HCode{<b>}}{\HCode{</b>}}
\Configure{textit}{\ifvmode\ShowPar\fi\HCode{<i>}}{\HCode{</i>}}
\Configure{texttt}{\ifvmode\ShowPar\fi\HCode{<code>}}{\HCode{</code>}}
\Configure{emph}{\ifvmode\ShowPar\fi\HCode{<em>}}{\HCode{</em>}}
% Translate verbatim and lstlisting blocks into <pre> elements
\ScriptEnv{verbatim}
{\IgnorePar\EndP\nobreak\vfil\penalty0\vfilneg\vtop\bgroup\HCode{<pre class="commands">}\NoFonts}
{\egroup\IgnorePar\nobreak\vfil\penalty0\vfilneg\vtop\bgroup\HCode{</pre>}\egroup\EndNoFonts}
%\ScriptEnv{Verbatim}
% {}
% {}
\ScriptEnv{lstlisting}
{\IgnorePar\EndP\nobreak\vfil\penalty0\vfilneg\vtop\bgroup\HCode{<pre><code>}\NoFonts}
{\egroup\IgnorePar\nobreak\vfil\penalty0\vfilneg\vtop\bgroup\HCode{</code></pre>}\egroup\EndNoFonts}
%\HAssign\fancyvrbNo=0
\Configure{fancyvrb}
{\IgnorePar \EndP \gHAssign\fancyvrbCnt 0 }
{\EndP}
{\gHAdvance\fancyvrbCnt by 1 \ifnum \fancyvrbCnt > 1 \HCode{<br />}\fi}
{}
{}{}
\ConfigureEnv{VerbatimExample}
{\IgnorePar\EndP\nobreak\vfil\penalty0\vfilneg\vtop\bgroup\HCode{<div class="tbi-example"><p><samp>}\NoFonts}
{\egroup\IgnorePar\nobreak\vfil\penalty0\vfilneg\vtop\bgroup\HCode{</samp></p></div>}\egroup\EndNoFonts}
{}
{}
\ConfigureEnv{VerbatimTask}
{\IgnorePar\EndP\nobreak\vfil\penalty0\vfilneg\vtop\bgroup\HCode{<div class="tbi-example tbi-task"><p><samp>}\NoFonts}
{\egroup\IgnorePar\nobreak\vfil\penalty0\vfilneg\vtop\bgroup\HCode{</samp></p></div>}\egroup\EndNoFonts}
{}
{}
\Configure{newline}{\HCode{<br>}}
%\Configure{Link}
% {a} % replaces a
% {href=} % replaces href=
% {name=} % replaces name=
% {} % replaces '#'
% Do not set `indent`/`noindent` classes on paragraphs
\Configure{HtmlPar}
{\EndP\Tg<p>}
{\EndP\Tg<p>}
{\HCode{</p>\Hnewline}}
{\HCode{</p>\Hnewline}}
\Configure{section}
{\EndP\IgnorePar\Tg<section id="sec\thesection">}
{\EndP\Tg</section>}
{\Tg<h2>}
{\Tg</h2>\ShowPar}
\Configure{subsection}
{\EndP\IgnorePar\Tg<div id="sec\thesubsection">}
{\EndP\Tg</div>}
{\Tg<h3>}
{\Tg</h3>\ShowPar}
\Configure{subsubsection}
{\EndP\IgnorePar\Tg<div id="sec\thesubsubsection">}
{\EndP\Tg</div>}
{\Tg<b>}
{\HCode{</b><br>}\ShowPar}
\ConfigureList{itemize}
{\EndP\HCode{<ul class="list-group">}\let\endItem=\empty}
{\ifvmode \IgnorePar\fi \EndP\HCode{</li></ul>}\ShowPar}
{\endItem \def\endItem{\EndP\Tg</li>}\HCode{<li class="list-group-item">} \DeleteMark}
{}
\ConfigureList{enumerate}
{\EndP\HCode{<ol class="list-group">}\let\endItem=\empty}
{\ifvmode \IgnorePar\fi \EndP\HCode{</li></ol>}\ShowPar}
{\endItem \def\endItem{\EndP\Tg</li>}\HCode{<li class="list-group-item">} \DeleteMark}
{}
\Configure{graphics*}
{eps}
{\Needs{"convert -trim +repage -density 200x200 -geometry 25\% -transparent '\#FFFFFF' \csname Gin@base\endcsname.eps \csname Gin@base\endcsname.png"}
\Picture[pict]{\csname Gin@base\endcsname.png}}
\Configure{graphics*}
{ps}
{\Needs{"convert -trim +repage -density 200x200 -geometry 25\% -transparent '\#FFFFFF' \csname Gin@base\endcsname.ps \csname Gin@base\endcsname.png"}
\Picture[pict]{\csname Gin@base\endcsname.png}}
%\Configure{tabular}
% {\HCode{<table class='table'>}}
% {\HCode{</tbody></table>}}
% {\ifnum \HRow=1 \HCode{<thead><tr>} \else \HCode{<tr>} \fi}
% {\ifnum \HRow=1 \HCode{</tr><tbody>} \else \HCode{</tr>} \fi}
% {\ifnum \HRow=1 \HCode{<th>} \else \HCode{<td colspan="\HMultispan">} \fi}
% {\ifnum \HRow=1 \HCode{</th>} \else \HCode{</td>} \fi}
%
\Configure{hline} {}
\ConfigureEnv{titlepage} {\HCode{<div class='titlepage'>}} {\HCode{</div>}} {} {}
\begin{document}
\Configure{tableofcontents}
{}
{\tocNesting{0}}
{}
{}
{}
\HAssign\IdTOC=0
\HAssign\IdTOCsub=0
\ConfigureToc{section}
{}
{\tocNesting{1}\HAssign \IdTOCsub=0 \HAdvance \IdTOC by 1 \HCode{<li class="has-subnav"><a href="\#sec\IdTOC">}}
{}
{\HCode{</a>}}
\ConfigureToc{subsection}
{}
{\tocNesting{2}\HAdvance \IdTOCsub by 1 \HCode{<li><a href="\#sec\IdTOC.\IdTOCsub">}}
{}
{\HCode{</a>}}
\ConfigureToc{subsubsection}{}{}{}{}
\Configure{TocLink}{#4}
%\ConfigureToc{section}
% {}
% {\gHAdvance \IdTOC by 1 \HCode{Items[\IdTOC]=["}}
% {}
% {\HCode{"]\Hnewline}}
%\Configure{TocLink}{\HCode{"\##2","#4"}}
%\ConfigureToc{section}
% {\HCode{<li>}}
% {}
% {}
% {\HCode{</li>\Hnewline}}
%\ConfigureToc{subsection}
% {\HCode{<ul class="nav sidenav-tbi subnav">}}
% {}
% {}
% {\HCode{</ul>}}
%\ConfigureToc{section}
% {\tocNesting{1}\HCode{<li class="has-subnav">}}{ }{}{}
%\ConfigureToc{subsection}
% {\tocNesting{2}\HCode{<li>}}{ }{}{\HCode{</li>}}
%\ConfigureToc{subsubsection}
% {\tocNesting{3}\HCode{<li>}}{ }{}{ }
%\Configure{tableofcontents}
% {} {\tocNesting{0}} {} {} {}
%\Configure{TocLink}{\Link{#2}{#3}#4\EndLink}
\newcount\c
\def\tocNesting#1{%
\expandafter\ifx \csname level#1\endcsname\relax
\ifnum #1=2 \HCode{<ul class="nav sidenav-tbi subnav hide">} \else \ifnum #1>0 \HCode{<ul id="sidebarNavList" class="nav sidenav-tbi">} \fi \fi
\expandafter\def \csname level#1\endcsname{\HCode{</ul>}}
\fi
\c=#1 \advance\c by 1
\loop
\csname level\the\c\endcsname
\expandafter\let \csname level\the\c\endcsname\relax
\advance\c by 1
\ifnum \c<10 \repeat
}
\def\hlink#1#2{\Tg<a href="#1">#2\Tg</a>\xspace}
\EndPreamble
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